Detail information of Chr3_circ_ig.70


General Information
CircRNA Name Chr3_circ_ig.70
ID in PlantcircBase csa_circ_001768
Alias Chr3:18086019_18090534
Organism Cucumis sativus
Position chrChr3: 18086019-18090534  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ig-circRNA
Identification method CIRI2;Find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Chr3_circ_ig.68 Chr3_circ_ig.69 Chr3_circ_ig.71 Chr3_circ_ig.72 Chr3_circ_ig.73
Support reads NA
Tissues leaf,root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTTTCTGAAAATGGAGACTCTAGTTGATGACACTGTGAAACAGACAATTGATTTGCAAGTT
GAAAGGGGTGGGGCGTCATTTACAGTACACCTAGTGgcaacctttctacacaaaggatttgatg
agatacgcaggcttggcctccgaagtgaaacagagcaggtttaattcatggtcaaactactctt
tcttttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAACCTTTCTACACAAAGGATTTGATGAGATACGCAGGCTTGGCCTCCGAAGTGAAACAGAGC
AGGTTTAATTCATGGTCAAACTACTCTTTCTTTTCCAGAATTATTTGAAAAACAAATTAAAGCT
TTACCGTTGTTTGCATGACTCTTTGTTTAGATGGTTCGCGTGGCTTCTCCACCCGGTGAAACAG
GAATGCTAGTTGTAGACTCTGTGGTAATAATATTTACTTTGTCTTGTACTTTCAAGTTACAATT
AGACTTTATATTATTATAATGATATTTGAATGATTTTGGGGTTTTTCAGATCCCCTCCTTTGGT
GTTTTTTTTTTTTTTTGAAATGGAAACAAGCCTCTTCATTGATATAATGAAATGAGACTAATGC
TCAAATTACAAGAGAAATATACAAAGAGCTTGAATCTCTAAGGGACAAAGAAATCGAGAACCAA
ATACACGGACAAATATAATGAGGCCCAAAAGCTTAACAAACCCGAACAAGGCAGAAAAACAACC
AAAACCACGACTGAAAAGATTCAAGACAAGTGAAATGTTGGGAAAGGAAACAAAAGTGCGCCAA
AAAACCATAACCATGAAAGAAGTAATCTTAGAAAAGCTTGAAGAAGATGCATCTCAAGAGGACG
AAACGAAAGAGCTGAACTATCTCAGATCCAACCAAAGAACATCTGATTCATAAAATGTTCAAAG
ACTACACAAGATGACAAACTGCTACCATGACTTCTGATGCACAACTGAGGCACCAAACTTGAGG
AGAAAACTTCTAAGGCTCGGATGAAGATGCAGGCTATTTGACGGGGCATCTTGTTGAAAAACCC
CTAAAGCATAACCCTTCACTGCTTACACTCGTGCAGAAAGTCCATGAAGCCTTTGGAGGACGCA
AAATCCGTTGGGAATAACCAACTGAACACTAGACTGCAATCAGCTACAAGATATTTTAGATGAT
CTGGGATTCCAATGGGCTGCACTGATGGTGGGAAAACCGGACACTTTTCATCAACCTTCGATTC
ATCTTCCAACTCTTCATCAATCTGAAACAAACATTTCGATTCTAAGGGCTCCATTTGCAACTGC
CCCTCATTTCCATCTGTCTTTTTGAAGTGTTCATACTCTTCACTACTCACGCTGAATGGAGAAT
TGAAAATTGTCTCGCTCTTCTTTTTGGACAGCATGACAGGAGTATGAGTTGGAGTACCTCTCAG
GAATTTCACCTTTGAATTAGGCATTGAGAAGCTATAGTATTCAAAGTGTTGAAGACGAGAGGAT
TGAGAATCTGACCTATTAGCTTGAGAGGGAGTTTGGATTTTAGAACAATTATTTTCTAAAACAT
CAGGATTCTGCTCAGGGAACAACTTCTCCTTGATGAGTCTCAATTTAGTTACTTCCTTTGGTCC
TTTTCTTCTAACAAAATACTTTGGGAAAGACTTGAATAAATGAGAGTATTTCCTCACTTTTGGT
TGGTGCTGGTCCTTTTTTTACAGGTATCCCTGCCCAAGGAAAAAAAAACGAAGAATAAGAATTT
GAGAGGAAAGAGGACTATTTGAGCGTTTACCGGACAAGGTCTTGCTTGATTTTGTATCATCAAA
TGATGGAGGAACTAACAGATGTGAATAAACTTGTGGCAACGTTCTGCTGTTGGAGCAGCTTGAA
GCGTTTGTAAGAGGGCCTTATGACTGATGGGCTGCCTTTGATGAAAATTCAAAAAGATTGGGCA
GTTTGTTATTTTTTTGTTTACAGCAAAGTTAATTCTGAACTTCTTATTGGGCACTGAAAAAAAC
TTAGCTGTCGGTTCATTAAACTCATGAGTGGCTCTCGGAATTTCAATGGGCCAGGTGGTGCGGC
CGGATTTTTCTCCTCTCATTAATTGCACTTCTTCATCTTCCACAACTTTGCACCCTCCTGATTT
TGAACGGCCATCTGAATTACTTAATGGCTTAGTAAATATTGGCAAACTACCTTTAATGGAGTTA
ACAATTGCCGGAGATTGACAAGACTGCTCCCTGGAATCAGAAACTTCCTTGGACTTCCGGTGAG
GTCTGTATCTATAGCTCAACCTTCTTATTGGTGGGGACAAAAGCATTCCTTTGAAGATTCAGGT
TGAACCTTGAGGGGAGAAGGAAATCAAACTTATAATTTAATGTCTTTTTTGGAATAAAAAGAAC
CTCTTTGTTAATAAATGAGACTAATGCTCAAAGTACAAGAGTAATATACTATGAGCAATAAGGA
GAAAAATGACTAAAAGGACAATAAAAACAGCAATATAAACAAGCCAAATAACTCAAACAAAAAA
GGAGAAAGAATAACCAAGCAAAATATTGTTCTTTCAATAAGAAGCAAATTTGTGTGGAAGAATT
GCAACTAAACGCATTGAAAAGAAAGTAGATGGAACACGAAAATGATCTTGAGCCCGAGAAGACT
TGCTAACAATTTTCAATCCAATAAATTGCAAAGTAACATTAAATTCTTTGAAGTAAGAAACCAT
TCTTGCGCTTGATGAGAGAAGATATAATGAACAAACAAACTCAACTGAAGTGCTGAAAACTAAC
TTATGATGCCCATAATAAGCTACGAGATGAGAGAAGAGGGAAAGCCAAGAGAACAACAACCATC
CTTGATAAGATGAAAACCAGGAACTGCTAAATTTTTAATTGTTCAATCAGTTGGAAAATATTCT
TGAGCCTAAACTTCTTCAATGAATCTAGGGGGAGAACTAGTTCTGAATTAAATCTAACTTAAAA
TTTAATGTATCATGAGCAATTTCTTCATCAAGCATAACCTGATTTAATCGAACCGTATCTATAG
GATTGAAAATTCATATATGAAAAGATCTCCATGAACCTTGCTGGGGGGAATGATTGATGAAATA
TCACCAAAATTTAAAAATATGTTACCCCTTTGATCATCTATTATTTCAATGGTTGCAGGGATAA
ATCTGCATAGATTTTCCTTCACTTGAATTTTAGCTTCTGAGACATTAAGGAAATTAATGGTTTC
AGTTGCAACGTTTTCTGATCCCCCAAAATGAGCTCCAATTGCTTCCATCCTCCATAACCCTTCC
TCCCCATCCTCCAAACAGGTTGTCTGGTCTTCTTTGTTTTTACCAAATCAACATAGCTTTCCTT
CCTCCCCTCATGTGACTGCCTTGTCGGGATTTTTTGAGGATGAAGCTTGGGAAAAGTACCAAGA
TTTATACTCATGACTCAAATTGAAATTCTCCAACATTGTGCTAAATAATTTCCAACCCTGTTTA
TCTGCACCTAAGGGGACATGAATAAAAGATCTTCCACCCATATGAGACCAAACACGGCATCTTA
ATCTCCAGCCTTTTTCAGTTCTGAATTTAGAAACTTCTACCCTTCCTTTTTCAATTTTTCTTTT
TTATAAAAATAAGAATCTTCTGGTCTTCAATTCATTTCTGAAATGACTTTCAAGAAAACAAATA
AGCTGTGAGTTCAAAATTGGTAGGATTTTGTTGGCATTGATGTCTTCCACCCTGGGAAATACCA
TTCTCGTGCCAAATGTAAAAAAAACAGGTTGTCTATTTTTCATCTTTCAACATGTATTTCTAAC
TTTGAATTAGGATAAACGGGAGACTGAAAATTTGTCAGAATAATGAACCGTCTTGAGCTTGCCA
GAGAAATTCGGTGAACGGTCAGAGTGCAGCCGTCACCGGAGGGCTAGTGCTGGTAGTCTAGGAT
GCAGTCGTCGTGGAACTACTGGAAAGAGAGAGACAACCGAAGAGGGAGGAGAGAGGAGAGGTGA
GAGAGAACAGAGTGAACTTAGCTTTTTTGAATTCTCAGATTCAAACACAATCTTTTCTTCCTTG
GATGGTTCTTTTTTGATACCCTTTTTTCACTCTGAATGGGAGAGTAAATTGTTTCTTTTCATTA
ATCAATCAAAATTTTGTTTCTTGTTAGAAAAGAAGGGAAAAAAGAAAAAAAAGAAAAGAAAGAG
AGCTCTCTTGTGTATTCATCCTGTAGTGAATAGTTTTTCTTTCAGAAGGTAAACTTTATATTAA
CCTACAACTTATTTTGTCAATGTTGCAGGTGCCAGGTGGCCCTGCCCATAAACTTTTGGAGCCA
GGTGATGTGCTTGTTCGCATGAATGGAGAAGTAAGGAGAATTTTTAATCTGTAATTATTCATTC
CTTCGTTCTATACCTATGTAGTTTCTTAGTTTTAACGACAATGTCCATGGTTTAGCTTTTCTGT
CATTTTGTTTGTGGCGAGGACAAAAATGCAATACGTTGGTTTCATTTTCTTCAATCATCATGAC
CCGGAAAATGAGAAACATTGTTCTTTCAATTGTTTTGGTTTTAGTTTTCCTAGATTCCCTGTTC
AGTCTGCCCATATAAATTATCTTTTATAATGATTTTTTTATTGAAAAATGGTACAGGTAATTAC
GCAGTTTCTGAAAATGGAGACTCTAGTTGATGACACTGTGAAACAGACAATTGATTTGCAAGTT
GAAAGGGGTGGGGCGTCATTTACAGTACACCTAGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.091780401
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019;He et al., 2020