Detail information of Zm00001d004640_circ_g.2


General Information
CircRNA Name Zm00001d004640_circ_g.2
ID in PlantcircBase zma_circ_001102
Alias circ465
Organism Zea mays
Position chr2: 124672697-124674696  JBrowse»
Reference genome AGPv4.38
Type   ie-circRNA
Identification method CIRI
Parent gene Zm00001d004640
Parent gene annotation Sec23/Sec24 protein transport family protein
Parent gene strand +
Alternative splicing Zm00001d004640_circ_g.1
Support reads 24
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d004640_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTAACAGTTTTTTTGAAATAGGAATTAGTTGAAGGTTTTGACCAGGAAACTGCGGCTGTTGTG
TTGGCAAGATACATCTCTTTTAAAATGGAGATGGAGgtggtacaattgaaataaactattcgaa
agatattaaagtccaaggtattattggaccatgcacatctttggagaaggtacagctatttgta
ttgtgttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTACAATTGAAATAAACTATTCGAAAGATATTAAAGTCCAAGGTATTATTGGACCATGCAC
ATCTTTGGAGAAGGTACAGCTATTTGTATTGTGTTCTCATTGTTCTTTAAACTGGAGGTATTGG
TATTGAAATTTGGCTCGATGTTTGCACACCTCAGAAAGGAGCCGTGTGTGCTGACACAATTGTT
GGTCAAGGAAATACAACAGCATGGAAAATGTGTGGGCTCGATAGAAATACTTCTCTGACAGTAT
TTTTTGATGTCTCACCGAGTGAACGGTCGAGCCAACCAGGACACCAAAATCCCCATTTGTATAT
ACAATTTGTAACAAGGTATTTCACCCTTTTGCCACCTTCGGTGTAAGAATGTCTCAATATACTA
AATGTCCTGATTCTTTTGTAGTTACCAACACCCAGAAGGTCAAATGAGGGTAAGAGTTACTACG
ATATGCAGGAAATGGGTAGACGGTTCCACTAATACCGAGGTTAGCTTTAAAATTTGTTATCTGC
TTTGTTTGTGATGATATACTCTCTTCTAGATCAAATTGTTACTCGGGAAAAATTGTAAAACTCC
TCCCATATATCACTCCGGTTTTGAGGTTCCGATTCCACCGGTTTTCGACAATGAAGACTTGATA
ATGTAGTCTTTATTAGAGTTCAGTATTGTAAAAGTTTAAACCCAATAATTTTAGAGCTTCCACC
AAAGTAATCACAACGACAAGCTTTAAACATGGTCGAAATTTCTTCACAACACAAGGTGAATAAG
CATAATCCAAGTGTCGGAACAGACTTGCATCAACTAGCTTTAATTTGGAGTCTTCGCGTCGAAT
ATTTAGTTTTGTGGTAGATTATTTTCTATAAAGGCAGCTCAATATTTTATGCAACATACTTGGT
GAATAATGTTTTAGTTCTTTGAACATGAACTACAGAAGTATTTTTATGAAACACACGCTGTAAC
TGCTATGTTATATGGGGTTGAGTGTTGGCCTACTAAGAGACGACATATCCAACAACTAAGTGTC
GCAAAGATGCGTATGTTGCGTTGGATTTGTGGGCACACAAGATTAGACCGAGTGAGAAACGATG
ACATACGTGATTGGCTAGGAGTAGCGCCAATTGAAGAAGAGCTTATTCAACATCGGTTGAGATG
GTTTGGGCATGTCCACCAGAGACCCCCAGAGGTACCGGTGCACAGAGGCATCATAAGACATGAC
AATAATGTGAAGAGAGGCAGATGAATGGAATATCCCTATGGAGTTGTGTTTGGATAGAAGTGCT
TGGCTATCCACGTGCCCGAACCGTGAATATGCCTTTTCCTTTTTAGTGCTCTCAAAAGCTTTTC
CCCCTCCCCTCCCCTTTCTCTCTCTCTCTTTTTGGTGACTTCTTGTTGGGTTTTAACTCTAGCC
TACTCCAACTTGTTTGGGACTAAAAGGCTATGTTGATGTTGATGTTGACACACTGTAACTGCAA
ATGAGAAGACTGGCTCTTGGCATTTCGTTAATGCAAGGCCTCACTAGCATTTTTGCACTAGGGC
CCAAATTATCCCATGCGAGGTGTGTTTTTTGCAATTTTCTTTCGTTATAATATTTTAGTCTGTA
CTCATTGTGTTATGCTCATGCTGGGTAGATAGTACTCTAATTTTACATTGTACATTTACATATA
TATCTTTTTTTGGTGGGGAAGCATGTGACAAGGTCTGGTATTAAGTTTCTACTTATGCTAATAT
ACACGGATTTCATAGTTCCTTAATTCCTTTTTTCTTTTGTTATGCTATTCTATGCAAACAAATC
TGCACCTGCTTATTCATGTAGAATATTGATTTCAGTTTTTGTGTGGATAGATTATATTTGCTTG
GTTGATATGCTAAGAAGTGGTAAGTGCCGACATTGTGCATTTGTTTTAACAGTTTTTTTGAAAT
AGGAATTAGTTGAAGGTTTTGACCAGGAAACTGCGGCTGTTGTGTTGGCAAGATACATCTCTTT
TAAAATGGAGATGGAG
Conservation Information
Conserved circRNAs osi_circ_008984
PMCS 0.117733096
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b