Detail information of Os06g0232000_circ_g.1


General Information
CircRNA Name Os06g0232000_circ_g.1
ID in PlantcircBase osa_circ_042291
Alias NA
Organism Oryza sativa
Position chr6: 6816574-6816767  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os06g0232000
Parent gene annotation Similar to Pro-resilin. (Os06t0232000-01);Hypothetical conserved
gene. (Os06t0232000-02);Similar to Pro-resilin. (Os06t0232000-0
3)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0232000-01:1
Os06t0232000-02:1
Os06t0232000-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAAGATAACGCACCGGAAGCTTAATCATCGTACTCCTGGCGGCGATGGTGGTGGTGCTTCTG
ATAACGCTGCTTCTTTTCATCATCAGAGTCATTtgtccatgagacgaacgatgaaacgactgag
caggagcatcttttattcacgcagagtactatggctggcaagtgatagcagcaatcgatggccc
cg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 194
Transcript exons: 6816574-6816767
TGTCCATGAGACGAACGATGAAACGACTGAGCAGGAGCATCTTTTATTCACGCAGAGTACTATG
GCTGGCAAGTGATAGCAGCAATCGATGGCCCCGTAGAAGATAACGCACCGGAAGCTTAATCATC
GTACTCCTGGCGGCGATGGTGGTGGTGCTTCTGATAACGCTGCTTCTTTTCATCATCAGAGTCA
TT

Genomic sequence TGTCCATGAGACGAACGATGAAACGACTGAGCAGGAGCATCTTTTATTCACGCAGAGTACTATG
GCTGGCAAGTGATAGCAGCAATCGATGGCCCCGTAGAAGATAACGCACCGGAAGCTTAATCATC
GTACTCCTGGCGGCGATGGTGGTGGTGCTTCTGATAACGCTGCTTCTTTTCATCATCAGAGTCA
TT
Conservation Information
Conserved circRNAs NA
PMCS 0.166666667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study