Detail information of BGIOSGA027489_circ_igg.1


General Information
CircRNA Name BGIOSGA027489_circ_igg.1
ID in PlantcircBase osi_circ_007587
Alias 8:6042849|6047732
Organism Oryza sativa ssp. indica
Position chr8: 6042849-6047732  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCCGTCTAATATGCTTTGAGATTTGTGCTGGGGAAGGAAAACGGAAAAAAAATCAGACGCGT
GCAGCCGGGATCAAACCCAACACATCCAACTTGGAGgcactgaaggtccaacagtagcccctgc
agcatctgatgccccaactagcacaccaacttgagacattggctccagtctttctgaaccatct
ctgagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCACTGAAGGTCCAACAGTAGCCCCTGCAGCATCTGATGCCCCAACTAGCACACCAACTTGAGA
CATTGGCTCCAGTCTTTCTGAACCATCTCTGAGCCACCTTACTGATCTCTGTGGGTGGTTATGA
ACGCCCATAGAAAATGTTTGAGTGGTCTGTCCGTCTGCAGAACGTGCGACCGATTTCTGGACCA
TGCAGTTTGCTTGGGCACACTGATAGTAGAATATCGTCTGACATGGCTCACCCTGAATTGTGTT
CTGCCCACACATCCTCCAATGGTAGCCATCATCAGCTAGGTATATGTTACCATAATCTGTGTGG
GATGGCGGGGTTGCCACCTGAATTACTGCAGTGTTCGACGAAGAACCCGTGTGCTGCTGTGCAG
TAGATGGTGCCGAGATTGAGGCTGAGAAGGGGCGAAATCCATGATCAGCCATGCCGTACTGCGG
TTGTCCTGATTGATTGTCCATTTCCTAAATGAATAGAACTGCTTAATTACTGCTCTTGCTATAG
ACTCACTGCTTTCTAAATAGGTATTGCTGCGGAAAAGAGTAGACATAGACAGCACCATTCCGAC
GTCATATTGGGAATCTGCTGTAGAGAATGCAGGCTAAAATGAAATGGAATTTGAATCTTGATGC
AAGATCCTATGGACGAAAACGTGAAAGATAGGAACCCGAAAAACTGTCGCAAGTGAAATAGCAA
AACCGTATTTTCTACTCCGTTTCTGAAGAAGAGAAATAGTAACAACTTGGGGACTTGCAGTTAG
CACCAGTTTGGTGTACTCTCTACTGCTATGAAAATCATGTGAAATCTAAGAGAAAAGCTCGGGA
AGAGAAAGCTAATCGACAAATTACCTGTTTATAGTTGCAAGAAATTCCGAAGATTGCAGCAATC
GCCGACAAGAGATCGCAACAACATGGCGATTCATCCAGGGAACCGAGTCAACTACACATCTGAA
ACTCAAAGTCAAGGTGGATTTTTGCTCGAGCCAGGCCGAGCGGTGGGGTTATGGGAAATAGTCG
TCTTGCTGTTCCTATAAAAAGGAATGACCAACACATAAACTCATAAACATTGCCATCACTATCA
GGAGACTGAAGAAAATATTTTCTCACGGTGAACTACCCATCTTACCCTTGCGATTCTTCTTGCT
TGGATCGAGCGAGCCAGCCAACCAGGTCGAGGTGCCCTGCCCCTCCTCGGCAGCTCCAGGAGCA
GGCAAGCCTCGGACCTGGAAGATGCTGAGCTATACACGAGACAAAGGAAGCGATGCGGCGGCGG
CGGCGGCGCCATTTCTGTTTGGGGTTTGCGACGGGAGGAGACGGCGGCCGGGACCTGACCGGTA
AAGGGGAATAGAATGGCTGAATGGGTGACCTGACCGGCGGCGAGCTCTATGAATGAAAGCAGGA
TTTTTTTTATTTATAATTTTTTTTATTAAAAGTTTTACAAAAATAATTTTCCATTTTGAAAATT
GACGGAAATAGTCGCCTACCGCCCTCTGGGGAGGGGCGATTTTTAAAAATCGCCCTCCCCAGAG
GGCGGCGAAAATGACGTGGCAGACGGCCGTTCGCTCTCGGGCGACGGCCGTCAACGAAATTTGC
AGGCGGCCCCCTTGGCCGCCCTCCGCGAGAGCGATTTTGTACTGTGCGGGGGGCCGCCTGCAAA
TGGGCGGCGAGGGGGGGCATGGAATTTTGCAGGCGGCCCCCTTGCCGCCCTCCGCTAGGGCGAT
TTTGCACTGTGCGGGGGGCCGCCTGCAAATGGGCGGCGAGGGGGCATGGAATTTTGCAGGCGGC
CCCCTTGCCGCCCTGGGGGAGGGCGATTTTTGCCCCCCCCTATAAAACCCAGTCCCTCCTCTGT
GAAATTTCATTATATTCACTAAAAATCCAAAAAAAAACGAAAGAGAGAGAGGGGAGGGCAGCAA
AAGGGGAGCGGCGAAGCCCTGCTGGTTCGCTCACTTCATCACAGGTATGCTCCCATACATCTTT
TGCATTTGTACTAATATGTTATGTTTGAGTATATATGTTGCGTTTTAGTTTTAGTTCCATATAT
TTTAGCACATCTGTAGCACACAGCACATATGTGTAGATCCAGAGCATAGAATATAATAGTATGA
ATTGAGACATAGACAGTAGTGTTAATTGTAAGATGTAGTTTAGTTTGATCTGGAGAATGTAACG
TACTTTTAGAAATTTAGAGGACAATATTGTAGAGAATGTAACTTAGGGCGTAGTACAGAAATGC
GAGGTTAACGCAGTTAATGTTTTCATCAGGCACAATGTCAAGTAAGGTCACATTTCAGATAGTT
CACGGTGAAGGAAATATTAGATTTGGTCCAGATGGTGTTGATCTGTCAGATTTTGTAATGACAT
CTAAGGGCATCGATAGGCCTGCGGAGAGAACATTTCAGTCAATTTATAGTTGGTTGTTGAGAGG
ATTTAGAATAGACCAAGAAGTCTACACAATGTCAGTATCTGTTGTAGTGAGTCGTGCAATAGAA
GGTTATTTTTGGGAACTAATGCCGATGGACAGCATTGCTGCTTGGAGACGGTATGTGGAAATGG
CTTTTGAACGGTCATGGCCCCTCGTTATATTTGTGTCGGTACAAGAGAAAGATACAAATGTTTC
AATGCGAACCGAAGATGTGGAGGGTCCTAGCAATGCAGGGGATGTTGTTGGACCATCGATGGAA
AATGAGGAAAATCAACCAAGGGAGGAGCAGGCCATGGGCATGGCGGATGAGGGGGAGAGAGTCG
GTATAATTGTTGATGAAATGGAGAGGGAAGATTCGGATAATGAGCAAGCGGAGGACGACGCATC
ATCCGATGAAGAAGGTGATGTAATGGCCACTGATTGGGCAAATGAGGACTTCTCTGGACTAGTT
ATATCAGAGGGTGATCATGTACCCTGGGAGTATAAGGAGAACGAGGTAATTGAGGGTGCAAGGT
ATGCTCATAAGGATGAGATGAAGGAGGCGGTGAAGCATTGGGCAGTTTCATTGCCGCGAGAGTT
TAGGGTGGTCAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTCGAATTAAATTGCCACGTAAGCACCACGTCACCACCACGTAGGATGAAAACCAAGTCAAACC
AGCCACATAGGCACCACGTAAGCCAAAAACCTCCATCCAAACCGCCGAAGGACCTCGTTTGCAC
TGGTTTTGTAAGTTAGGGGACGGATTGTATCCGGTTTTTAGGTTCAGGGACGAAAATCGGATTC
ATTGTCAAGTTAAAGGACCTGAAATGAACTCATTCCTTCTTCATTCTACCTGCTGCTAAGCCTA
CTAGTGCAACTGTTCCAACTGTGCTTCCCCAACAGAAACACCTGAAATACATGTAATATCAGAA
GTGGTGGTGGGCTGGTGACGGAACCACCACCACCATTATTATCTTTTATAGTAGTATAGATACT
GTGAGAGTATTACTTGCATGAATTTCTTCACAGCCATAAGGCTGAGTTCGAGAGTTAACATGTG
ATAAATTAAGTACTAGCATAAACATTTTTAAAAATACACTAATATGTTTTTTTAAGCATCTTTC
CTATATAAAACTTTTGTAAAACACACCGTTTAGTAATTTAAAAAGGGTGCACGCCAGATCATCC
AAAATATTCAAGAAAGCATATTTGATTTCCAACCGCCATGATTATAGTTTTTCCCCTATCACAC
CAGGCATTATGGTTTTGGGCTCTTCATAAGTTGTTTTTCGCCTTAATCGTGTAATCGTGTAAAC
CTTGAATTTCTCTTCTTCTAATACATTCAGCAATACTCTTGCCGCTTTTCTTAAAAAAAATGGT
TAATTCGATCCATGCCATTAAAAATATGGCTATTTAGATAAATATCATTACAATTCGTGTATTC
GTAGATGTGCCATTGAAATTTTACGAAATTAAAACCGTGCCACTCACGTTTTCTATCCTTTCTC
ATTTGCATGTGGGACCCATATGTCATATTCATCTTCTTTCCCATCCTCTCCTCTTTTCCCCATC
TCTCTCGATCCTGAATCCTTCACGCAGACGACGAGATCGCGCTCCTCGAGAAGGGGCCTCCCGG
CGGACTCGGCGGCGGAGGAGGAGGAGGCTGCGGTGGTCGAGCGGCACCATGGTCGGAGGGAGAT
GGAGCTCGGGGGCAGATGGCGGCGGGGGAGGGGGCGGGACGAAGAGGAGGAGAAGAGAGGGGAA
GAGGAGGAGGTGGCCGCGGCAGCGGTGGCGGCCAACGGCGGCGCCATGGGAGGAAGGTGAGGTC
CATGCACCTCCAGATGCTTCTTCCTCCCTAGTCGCAGCTCGGCTTCAGATGACGAGCGGCGGCG
ACGGCGGGAACATCCGAAGGCAGCAAGGCATGCACCCCTATGGAAGAAGAAGACGCGGCACGGG
GAGGCCACCTTGGTCGTGTGCCTCTCCGCCGAAGCCGGCAGCGGCGACCCCTACGCCGAGCTAT
GGATCCAGGAAGAAGACGCGAGACGCGAGAAGAAGAAGACGATGGAAAAAGGAAAGAGAGGATG
GAAAAAGTGACAGCAGTGGTACGGTTCCAATTTTATAAAATTTTAATGACACATCTATAAATAC
ACGAATTGTAATGGTATTTATCTAAATAGCCATATTTTCAATGGCACAGATCAAATTAACAAAA
AAAAAAAACGGATTTGCTATACAACTGTCGACAGTTAACAGGTGTGAAAACTTTCAAATTTTAA
GCCGTCTAATATGCTCTGAGATTTGTGATGGTGAAGGAAAACGGAAAAAAGCCGTCTAATATGC
TTTGAGATTTGTGCTGGGGAAGGAAAACGGAAAAAAAATCAGACGCGTGCAGCCGGGATCAAAC
CCAACACATCCAACTTGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021