Detail information of Os02g0276500_circ_g.2


General Information
CircRNA Name Os02g0276500_circ_g.2
ID in PlantcircBase osa_circ_014261
Alias NA
Organism Oryza sativa
Position chr2: 10157667-10162157  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0276500
Parent gene annotation Similar to Tocopherol cyclase. (Os02t0276500-01)
Parent gene strand -
Alternative splicing Os02g0276500_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0276500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAAACATCAAGATGCACATGCCTTCCATCATCACGTATAAAGCCTTGATGCCAAATCGGTGT
CACTTGGAAGCCTTCCAAAACTCGACTAGAAAATTCctttcccttgccaccatcatttctcttt
tcccacatttgcagcctcagatcaccatagcaggtgtctttgcatgctggcactagtccagcct
ccatggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCCTTGCCACCATCATTTCTCTTTTCCCACATTTGCAGCCTCAGATCACCATAGCAGGTG
TCTTTGCATGCTGGCACTAGTCCAGCCTCCATGGTTGGAGCTCGCAAAGCAGTGCCTGGTTCTT
TTGTGGTTGCTTCTATTTCAACCTGTAGAAAAGTAGCAATGCATGTTAAGGGTCGCATTCACCA
GGTGCTAGGCACTAGTCCGGTGATAGATCAGCTCCTGGCACTTAATTGGATACTAGGCCAGCAG
GCTGCCTAGCACCTAGATAATCTGCTTTTAGAACATTGAATGCTAATCAAGGAACATAGAACCA
CATAAGTAACCTTACAACCTAAGAGAATCTATAATACAAGTAAGAAAGCTAAGTGGGAATCTTG
CTCGAATGTGAACAGTAGCCAACTAGCACAGGCACTGCATTACATTTTCAGCACGCTGGATGAT
AATTACCAGATGATTTTTGTTCTCGCCGGACAACTTCCAGTGACCCCAAGGGGCAATGTCCCAG
CTCACTGTCCCGGTCCAAGGCACAAATTCATAGAATTTTCCCTCATAATGAATTCCAATCTGCA
GGGAACAAACAGAACTGTTATGTATGTGCATAGTTAAATTCGTAAATCTTCTGTCTGATCATTG
TATGCTTCCTCTTATGAAAGTTAATATGCAGGGCACAAAGCAAACAAGCATCGTATTGAAATTA
CTGGCTAAAGAAAATATATCTATTACCTGGTCTCAATAAATACATGGTTTTGTTGATGTGGATG
TGAGTACAAAAGCAAAGCAAGAAAGTGGATAAGAATGACGTTGGACCTTCTATAAAAGAGGAAG
AATCCATAATAACATCACAGAAACACCACAGGACATTTAAAGGAAACAAAGCATGCTGCACTTC
TTTTTGGAACAAGAGATTATTCCAACCCTGTCTCAGGCTGCACACAAGCTTATGCTGCCAATGC
TTTTTACTCACCCTGGTGGCTTTTCTGTACGTTGGTTGTTTCGACTGTCAGAGGTCTAGATGTA
AATGTTCTGTGGGATGAAAAGTCGCCTAGATACATACAATTAGTGTAACTTTCATGATACATAC
ACAAAAAAGATCTAAACTTAAAACCACTGCGGTAAAGGGGATTCTAATTTGTGGCATAACCATC
ACCAGCAATACATTTATCCACTAAATCCATAAAATGTTGTATCAATGACCAGTCCTGAAATGAA
AATAAACCCATACTTCGGAAATGGATAAGATTTTGTCAGTCAAAATTTTTAGGCCAACTGGTTG
ATCAATAATATTCCCTTTTGCCTTACTGGCAGTCTGGCAGACATCCAGCAATCAAGCTTGCATG
ATGAGCTAAGTTGCAGAACAAATTAGAAGTATGCATCAGATTAAAAGCTGAAAGTATCAGGACT
CTACCAGTGAAGGACTTTCATAGGTTTCGCCCAATCCAATTTTCCTTAATCCGCCAGCAGCCGT
TAATGCAACTTCACCAGATGCGCCTGAGAAGACATTGCACTGGACCTGTATGAGCAAAGGTGTT
CAATCAGTTAGTTTGGTCATTCATGTGAAGTTTTGAGTCAAACTAAAACATACTCTCTCCATTC
ACGTTTACTTGTCACTTTTAACCATGGCACATAAATTTGTGTAATCATTTGTTTTCATGTTAAA
TGACCATATTACCCTCCACAACTAACTAGATAATTAATATGGATAAAATTGGAAAATGTGCATT
ACGAAACGTGAAGCGACAAGTATTTGTAAACTAGCTATATCATGAATATTTAAAAGTGCATAAC
CTCTATAACTATGACTAAATGTACCAGTAAAATTGACTACTTTCAACCGACCACACTATGTTTA
AAGAAGGTATTTTTTATCATGACCACTACAACCATCATATTGCATGCCATTCTTGAAACCTTCA
TGCATATTGGGTTTGTTCAGAACCTTCACCCAGCTTCCTTTGATAAAGAGATGCAGGATGAGAT
GCAAGCCAAACATTGCCCTGTGAGCAAGGAACTAACAATATCCTTGCTCAATGAGGTGAGATTG
CCAGGCAAAGCAAGCATTTTTGTTGTTACTGGAGGCCTAAACTCTTAAATCCAGGTGAGGCAAG
GGATCTAAACAGCCCAAAAGCTACTACGGGTGAACATTACTGGCAACACAAAACACAGAATTAC
AGCAAGAAACAGCATATTTTCTATCTGTAAATGAAGCAAAACTTATTCAGTATTCCAGTGTATC
CATTACATCAGGATTAATGGTCAGAAAGAAGATAGAAAAACGCACCCAATACCACTTCCTCGGA
AAACCTGCACCCCAGTTCTTTTCTGAATAAGAAGGAGCATTTTCAAATTCAAACCGCTCTCCGT
CCCATTCAATCCATCCTGAGTAGTTAAGTTGCAGAAGTTAGTATTGAACTATTAACTTAATATT
ATTATAACCTTCCTAACACTATATCATATCACCTCAATCAATCGTGCGCTACTACAGGACTGAA
CTGGAGAAATCATACTGAATGGAATAAAAGGATTGGACATATAGATAGGACTAGCCACATTTCC
TGGTATTTTTTAGTGCAATTTGGATTCCTACAGAAATATTAAAGAAAAAATTTGAAATAAAGCT
TCATCAATGGAAAACCAATTTTCACATTTTAGGCTAAGAAATACAACTCCATCGTACATGATAG
TTTTACACATGAGAGATGAATGTATCATTCAGTAAATTACTCAGTGGCACATGTGCCATCTACC
TAGAATGAAAACCAGTAGGTAAAAAGAAAAATTAAATATCTCTCTGTTCAGTTTATCAAATACA
AAGAAATACAAACCTGTGGATAAGCCACCAGCCATGCATATTTGCCAATGAGGTTCAAAGAAAG
GAAAAGCAGCAAGCCAACCAGCAGTTGATTTCTGCTTTGACGTGACATCACCCCAGCCATATAC
TGGTCGAGTGCTGTACTCCCACCTAGCTGTTTGGACATTTGGCACATACTTTGACCTGACAGGG
GAGCAACAGGTAATTTAAATTTTAATTGTTCATTTAATAGCAATAAAGTGTAAACTCTCTTTTC
TACTCAATCCCCATTTACATTTTGAAGGGAAACATTAATTACGGTATTGTATCCAGTCCTGACA
TAAACTGCTAGGAGTTGTTCTCTAGGATTTGCATGTAATATAAGCATCATCATAGTAGTAATAA
ACACATTGCATAACATTACTAAATAAATCTAAAAGCATTGTCAAGGTCTTTTTTTTTCTTATAA
TATGTAACATTCGATACAATCAAACCATCCAGAGCAATTTTCTTAATTACCTGCAATCGTGGTT
ACACACGAACTACTGTTTTTTCCTAAAAAAAATTTATATTAAGTTAAGTGCAATGTATGAGCAA
AGATGGTGTCGCATCACCTTTCCTCTCTACAGTTGAATTTGCTATTAGAAATGTGTTTGGGCAC
AATATATAGTTCAAGAAATTTGGAGCACCTAAAGGATAGAAACTTCTATATCCCTCTCTGACAA
GGCAATAAGCGTATCAAGTGTGTTGTCTTTCATGAACTTCAAAAGTGACAGCGAAAGAGCTATG
TTCATTTTATCATTTTACGGTAAATTTCACAAAACAGCAATTATATGGTTAAAACTATCACTTT
GCTGCAACTTTAGCAACATATTTCACAAAATTGCAACAATAGCAAACGATTTTATCAGAAAGCT
ACAACTTTATCCCCCTATGTGTTTATGACATGTGGGCCCAACTTGCAGGAGCATGAGTATGGTA
TATGTGTATAGCATGTTGGTCCAAACTTGTCAAGCAAATAAAGTTGTAGTTCTATGATAAAATC
ATAAAATGTAGTTGCAGTTCTCTGAAATGCCTAGCTAAAGTTGTAGCAAATTAATAGTTTTGAC
AAATAGTTTTAGTTTTCTAAAATTTACTCATCATTTTGTCTTGTCATATTTTCAATTGCATAAA
TGCATAATTCCATTTTACAGATTAGGAAATCCATCTGCCTGATTTCAAAATTCAGATTGGCAGA
AAATCCTGCCATCATGGTATTCGAAGGATACTAATATCTATTATCCTTTTGTACAAACAAGCAA
ACCTTCCTCTCCAAATAGTTTCGTACTAAGCAGATATTTCAAATTTTGTACATGATTCTACAAT
ATTATATTTTGATTGACCAGAATACAATTCTCAGGTTATTTCATTTAGCATTGTGTTGATGAGC
TAAAAATAAATAAATTCTCAACATGCAGATCCAACTATTCTTTATAGTTCAGCTATGGAAAGAA
GCATTTCGCACTAAATTGGCAAAAAAAAAAGCTCAGTAAGTAAACTGTAATGACTTTTCAATAA
AACATAGAAACATAATAATAGTTACAAGAATAGATCTTAGATAAACATCAAGATGCACATGCCT
TCCATCATCACGTATAAAGCCTTGATGCCAAATCGGTGTCACTTGGAAGCCTTCCAAAACTCGA
CTAGAAAATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.102179353
Functional Information
Coding potential Y
Potential coding position 10162108-10157747(+)
10160519-10157669(-)
Potential amino acid sequence MPNRCHLEAFQNSTRKFLSLATIISLFPHLQPQITIAGVFACWH*(+)
MAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKI
GLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTAL
RAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKEFSSRVLEGFQVTPIWHQGFIRDDGRSK
YVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERF
EFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYE
GKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTC
YGDLRLQMWEKRNDGGKGKEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPV
YGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGF
PRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDI
APWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGK
GKEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWL
AAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASG
EVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLV
EIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017