Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0109000_circ_g.1 |
ID in PlantcircBase | osa_circ_008263 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 423931-424352 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0109000 |
Parent gene annotation |
Protein phosphatase 2C domain containing protein. (Os11t0109000- 01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0109000-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009008 |
PMCS | 0.317018582 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
424174-424349(+) |
Potential amino acid sequence |
MDDEPDVPRMWLPDQDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHL IIANLGDSRAVLCTRDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPD QDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHLIIANLGDSRAVLCT RDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPGLAMARAFGD FCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHLIIANLGDSRAVLCTRDSKDRPISVQLTT DLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPGLAMARAFGDFCLKSHGLICTPEV YYRKLSAKDDFLVLATDG(+) |
Sponge-miRNAs | osa-miR319a-3p.2-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |