Detail information of Os11g0109000_circ_g.1


General Information
CircRNA Name Os11g0109000_circ_g.1
ID in PlantcircBase osa_circ_008263
Alias NA
Organism Oryza sativa
Position chr11: 423931-424352  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0109000
Parent gene annotation Protein phosphatase 2C domain containing protein. (Os11t0109000-
01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0109000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTTCTGCTTGAAGAGTCATGGACTAATCTGTACACCAGAAGTCTACTACAGGAAGCTATCT
GCAAAAGATGACTTCTTGGTACTTGCTACTGACGGGggtgatcacctgatcattgcaaatttgg
gcgattcacgtgcggttctttgcacccgagacagcaaggaccgcccaatttcagtccaactaac
cactgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATCACCTGATCATTGCAAATTTGGGCGATTCACGTGCGGTTCTTTGCACCCGAGACAGCA
AGGACCGCCCAATTTCAGTCCAACTAACCACTGACCTGAAACCAAATCTTCCAAGTAAGCCTCT
GAATTTCTCAAAGTACAGAGATGTCTAAATTCAGACATTCACTTGTCATTCATATGGGGGCTTC
TGACAGGCGAAGCTGAGAGAATCCTGAATTCCAAGGGGCGGGTTTTCGCCATGGACGATGAGCC
GGACGTGCCTAGGATGTGGCTACCAGACCAAGACGCGCCGGGCCTCGCCATGGCAAGGGCATTT
GGAGATTTCTGCTTGAAGAGTCATGGACTAATCTGTACACCAGAAGTCTACTACAGGAAGCTAT
CTGCAAAAGATGACTTCTTGGTACTTGCTACTGACGGG
Conservation Information
Conserved circRNAs osi_circ_009008
PMCS 0.317018582
Functional Information
Coding potential Y
Potential coding position 424174-424349(+)
Potential amino acid sequence MDDEPDVPRMWLPDQDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHL
IIANLGDSRAVLCTRDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPD
QDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHLIIANLGDSRAVLCT
RDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPGLAMARAFGD
FCLKSHGLICTPEVYYRKLSAKDDFLVLATDGGDHLIIANLGDSRAVLCTRDSKDRPISVQLTT
DLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPGLAMARAFGDFCLKSHGLICTPEV
YYRKLSAKDDFLVLATDG(+)
Sponge-miRNAs osa-miR319a-3p.2-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017