Detail information of BGIOSGA013997_circ_g.1


General Information
CircRNA Name BGIOSGA013997_circ_g.1
ID in PlantcircBase osi_circ_013919
Alias Chr03:39263463_39264738(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 40774487-40775762  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA013997
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA013997-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGTTACCAGTGGCTAGCAACATGAACATTGTACAAAAGAGTTCATTAATTTGCGGTGCAGAT
GGAACCAGTGGACTTGCTTCATCCTCAAATCAAATGggattaaatcaaggtgttggtagtgtac
cactgaaaggctggcctcttacagtgagtttgctgatatccctttccatatgcttgcatacttc
tctggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTAAATCAAGGTGTTGGTAGTGTACCACTGAAAGGCTGGCCTCTTACAGTGAGTTTGCTGA
TATCCCTTTCCATATGCTTGCATACTTCTCTGGTTTCCTTGAAGAAAAGCTTACCTACTAGTTG
CCTGCTGAAGGTCCCAGGTATTGACCAACTCCGGTCAAATTTAGGTGTGCAGAAGCAGTTGATG
GCATCTCCAAACCAATTTCAACTTTTATCGCCACAACAACAGTTAATTGCTCAAGCACAATCAC
AGAATGACCTTGCTAGAATGGGTTCTCCAGCTCCATCTGGTTCACCAAAGGTTCGACCAGATGA
ATCAGATTATATGATGAAGGTCAGTATGCAATCGGTCTGAGAAACTTTATTTAAGAGTTAATGA
CATGTCCAAACATAAGTTTGCATATCCATAATGACCTATGTTTTGCTTTCATATTATTCTACGG
TTCTATCAATACATTCACCTGTTTCAATTAAGAACACTACGTTAGTGGTTCACTTTCTGTTCCT
TGTTCTGTGTTATAATTACTCAGGAAATTTTCTTTGATATTTGAATGGAAATTAAACTGGCCAT
TTTGTTTTATTTTGTAATAATATTACAGTTTTCCCTGCTTTGTATTTGACATTAGCTCTTTATC
TTGTATTTAAAAAAAAAATCTAAATCCGAATTTCAGTATTTTTTTTTGTTTTAACTTATGGACC
CACCTCAAAATCAATGGCTTAGATATTCGCTTTCTCTGATAATGTGATAATTTCTAATTGAGAA
CAATTCTGGAGGTTCATTTTCACCTTGTTCTAGCAACACAATATATTCTATGGGTAATTATACT
ATTTTTGTCATTTTTTAGTACTGTATGCATGTATTCATTAACTGCACACACTATTTTGCAATCC
TATTAGTTGAAGATGGCTCAAATGCAGCAGCCCTCAGGTCACCGTCTTATGGAATTACAGCAGC
AATTGCAACAGGTTGAATGAACTAATTAGCTTGTTACAAATAATATCAACTTTCCCTAACTCTA
TATGGGCGATACCTGAATGTTCCAATTATTCTTGATATCCAGAATACTAGAAAACGGAAACCAA
CCTCTTCCGGCGCAGCTAATAGTACAGGCACAGGAAATACTGTTGGCCCTTCCCCACCCTCAAC
TCCTTCCACTCACACACCTGGTGGTGGGTTACCAGTGGCTAGCAACATGAACATTGTACAAAAG
AGTTCATTAATTTGCGGTGCAGATGGAACCAGTGGACTTGCTTCATCCTCAAATCAAATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021