Detail information of Zm00001d034832_circ_g.1


General Information
CircRNA Name Zm00001d034832_circ_g.1
ID in PlantcircBase zma_circ_006982
Alias zma_circ_0000590
Organism Zea mays
Position chr1: 303284760-303287708  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d034832
Parent gene annotation Probable acyl-activating enzyme 16 chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d034832_T008:5
Zm00001d034832_T002:5
Zm00001d034832_T004:5
Zm00001d034832_T003:5
Zm00001d034832_T005:5
Zm00001d034832_T006:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAACAGCCTTCCATTCATGCAGAGTCGAATCACTTCCACCAGGCAGCAGAGCACTCTCCAG
TAGAGGTGAGCACTTTTTACGTACTTGATGTTCTATctgatgcaagagatttcggtgggtaagc
attacgccttttggtgtgccacttgttccactagtatatattagtgtggccacatcttcaggac
taatagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATGCAAGAGATTTCGGTGGGTAAGCATTACGCCTTTTGGTGTGCCACTTGTTCCACTAGTA
TATATTAGTGTGGCCACATCTTCAGGACTAATAGATTCAAAGACATCTTGCTGACCTGACATAT
GAAAAACAAGAATTCCATTGACTATCATGGTTTTGAAAAAACAACTGTGTATGGGTGCAAGTTG
ACCAGAAAGTACTGGACATTCAGTTTCCATGCTTGGCCAAATTGTACAGGCATAATCAACCTAC
TGCATAATATGACGGCATCATTGAAGGGAAAAAGAATTAATGAAGAACGCAATCAATTTGTTGC
ATGATACATCAGTGTCATGTCATCGAAGAAAGGAAAAATACTTTTCTAAAAACAAAAGATGTAT
GAAATTCTTCGCCTACTGTTATAATCTTGAAATAATAAGAAGTGTTAGTGCTGTTCTTTAAACC
AACAGATTCCAAATGAGTGCTGCTTAGCAAGAAAGAACTTAAGTAGTTAAGTGTTAAGCTCTTC
ATATAACTAAATGGTCAGCTCAAGTATTAAATCAGAAATTTGGAAAGAACCATACATCCTAAAT
GTTACAGGGCAAGAACTGAGCTAAATGTGAGAGCAATTCCCCACCCCCAGGTTCAAGTTCTCTT
CAACTTGAATTTAGGTGCCAATTTGTTCTTAATGTCACATGATTCCTCTTATGTTGGCTGAATT
TTATTTTTTAACATCACAGGCACACATATTAGCTGTTTGTGGTACAGGATTGGATGCTCATGTT
ATGGGGTGTGATGCCATCAAACACGATGAGCATACTACATGGCAACATAGCTTATGAATTTATT
TATCCTTTACCACTAGAAACAGTGGTATAACATAAGATGTGTCCATAAAAAATTAAAACGACAC
TTCTTAAGAAGCTGCGCTGTCAGATGACTGTTAATGATGATCTGTACCTTGCTCGTCGGAAAGA
AACAGTGCATTGCGGCTTTCTCGACCAAGTTCGATGATATCCTTGTATCCATAAAGTGGTATAT
CCTTAATAGCTTGGCTATCTATGCATGATTTGTCACCCCAAAGAAGAACAATGAATCTTGTATT
AATCCTTGACATGAAAGACTCTGCAAGCCGGTTAAAGAATTGAGGACTGTCCACAACAAGTGCA
ATGCTGTGCTGGGGGAAAACAAGAAATCCATAATCACAACATGAAAGTAAAACATAAGCAAATA
TATGTGCTAAGTAAATATTATGCAGAAACATAAACCACTGATAGTACTATAATCTCTCTGCCTA
CTTTTCCAGGATTCATATGATACATCAGTTTATCAAGTTTCATGAACTTATGTGCTTTGCATAA
TTATAAGCTGTGCAATCCAATGATATTTTGATTCAGCCAGCAACCAGTCATATACTGAAAATCG
ATGCCTATATTCCATGGTCAGGTTTAACTGTTCAAGCAAAACAATCCAATTAACATGCCTGGCA
TGTATATTTCTTGGGTTCAAGCTTCTAGCAACCTAGCATTTGATAACAATATCTCATTCAAATA
TTTTTGCCTACCATAGATATCAAAAGGTAAGAAGAGTCACATGCTGGCTGTTTTTAGCAGAAAC
TATATATCCTTTTATTTTTTTCATTTATTACAGGTATAAGAGAATTTAAGGGTTGAAGTCTCAT
AAGGCCACATGGTTTGGAGATAAAATACTGGAACTTCACTGGAATCCATGCTATCGAACAATTT
GATAAACTGACCTTTCTGAATGAGTGTATATTTGAAACAATTCTTCATCAGATGATCTTGTTCC
CCTAACAACATTTATAGCACCGGTTGCCATGATTCCTGTATGTCATTTATTTGTGTGAAATACT
GAAACCATCAGTGACAGAGGAAGACTCTGGACAGTATCCATGAAAACGATAAACAAAGAATTAT
GCATATAAATTCATAAAACATGTATATGTAGCATTGTACTATATGGCTTTAGAACATATCACTA
TATATTACTGAAAAAACAAGGCCAAGCTGATATTTGTTGTCTATTATCTGCAACAGTCAAATGC
TAACATTCCAGTGCTCCAGCAGCAAAATCCAGAAAGGATAAGGAACCGCAGAATTATCTCCAGT
GAAGTAATAAGAAAGGGGAATGTCAACATTAGGAATCATAATGCATGGTGTTTTTTCTGGAATA
CGCAGGAGAGCTGCGCATCTTTGTATTAATAGAAGAAAAGAAAGGGGGGAGAGAACCCCAATAC
AACACACACACCACTAGAGACTAACTAAGGAATCATAATGCATGGTGTCATCTCAAACAGAGGA
GAGGAGTAAGTTACCTTGATCTGCAACTAGCCAACGACATGAGTTATCAGCAAAAAGTGCTAGC
TTTTCATCCGGAGCAACACCAATGGCCCTTAGACCTTGAGAAAAATCCAATATTTCTTGCTCAA
GCTGATAAGAACATAAATCAGCAATTAGGTACTGCAAATTTGTGGCCATTAAAGCTCTGAAATA
AATGCAACTGTGTATTATAAATGTCATAGGGAAGATGAATATGTTTAATTGATGAGAACTTATG
ACTCAAATAGAGCAGTATTCATTATTGTTGCCATTTGTGTGCATCTAACAGTAACATGAAATCA
TGTAGAGAGCCCCGCTTGTTCTAAGTATTCATGATGGCTTTCGAGCTCATCCTCCTTTCCTTTG
AAGGTGATTAGTATTCAGTATTTGTACAAAAATAACATTTATGCATGGCCATTGAGGTCAAAGA
TGTACCTGTGTATACGTCCATTCCGTTGGCGGTTCATGGTAAGGATCTACCACAGCTACGAGGT
CAGCATATTTTTCTGCTGCTGTCCTCCAAATATCTGGAACAGCCTTCCATTCATGCAGAGTCGA
ATCACTTCCACCAGGCAGCAGAGCACTCTCCAGTAGAGGTGAGCACTTTTTACGTACTTGATGT
TCTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.030012694
Functional Information
Coding potential Y
Potential coding position 303287701-303284828(+)
303286583-303284762(-)
Potential amino acid sequence MFYLMQEISVGKHYAFWCATCSTSIY*(+)
MATGAINVVRGTRSSDEELFQIYTHSESIALVVDSPQFFNRLAESFMSRINTRFIVLLWGDKSC
IDSQAIKDIPLYGYKDIIELGRESRNALFLSDEQGQQDVFESISPEDVATLIYTSGTSGTPKGV
MLTHRNLLHQIEHQVRKKCSPLLESALLPGGSDSTLHEWKAVPDIWRTAAEKYADLVAVVDPYH
EPPTEWTYTQLEQEILDFSQGLRAIGIMATGAINVVRGTRSSDEELFQIYTHSESIALVVDSPQ
FFNRLAESFMSRINTRFIVLLWGDKSCIDSQAIKDIPLYGYKDIIELGRESRNALFLSDEQGQQ
DVFESISPEDVATLIYTSGTSGTPKGVMLTHRNLLHQIEHQVRKKCSPLLESALLPGGSDSTLH
EWKAVPDIWRTAAEKYADLVAVVDPYHEPPTEWTYTQLEQEILDFSQGLRAIGIMATGAINVVR
GTRSSDEELFQIYTHSESIALVVDSPQFFNRLAESFMSRINTRFIVLLWGDKSCIDSQAIKDIP
LYGYKDIIELGRESRNALFLSDEQGQQDVFESISPEDVATLIYTSGTSGTPKGVMLTHRNLLHQ
IEHQVRKKCSPLLESALLPGGSDSTLHEWKAVPDIWRTAAEKYADLVAVVDPYHEPPTEWTYTQ
LEQEILDFSQGLRAIGIMATGAINVVRGTRSSDEELFQIYTHSESIALVVDSPQFFNRLAESFM
SRINTRFIVLLWGDKSCIDSQAIKDIPLYGYKDIIELGRESRNALFLSDEQGQQDVFESISPED
VATLIYTSGTSGTPKGVMLTHRNLLHQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b