Detail information of Os10g0573700_circ_g.2


General Information
CircRNA Name Os10g0573700_circ_g.2
ID in PlantcircBase osa_circ_008132
Alias NA
Organism Oryza sativa
Position chr10: 22776916-22777180  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0573700
Parent gene annotation Similar to Mitochondrial carnitine/acylcarnitine carrier-like pr
otein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-l
ike protein) (CAC-like protein). (Os10t0573700-01);Similar to Mi
tochondrial carnitine/acylcarnitine carrier-like protein (A BOUT
DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein)
(CAC-like protein). (Os10t0573700-02)
Parent gene strand -
Alternative splicing Os10g0573700_circ_ag.1 Os10g0573700_circ_g.3 Os10g0573700_circ_g.4 Os10g0573700_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TA-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAGAAGAACATGAAACACAGATTTCTGCCAATGCATCATCGACCCAACTGATAAACATGAA
GCTGAAATTATACAAGGAAGAAGAAATATAAATTACttcgtttatcattcagcaaaaatccgac
attttttacaggattcagcgaaagaaataccaccacacaggcattcagattctacgtcagatca
gatgataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCGTTTATCATTCAGCAAAAATCCGACATTTTTTACAGGATTCAGCGAAAGAAATACCACCAC
ACAGGCATTCAGATTCTACGTCAGATCAGATGATAAGCTAGAATTACCACCCCCCACAAATCTG
AAGATCTGCAGTCCAATTTGCTAGTCAAACATAACAACTGAAGAAGAACATGAAACACAGATTT
CTGCCAATGCATCATCGACCCAACTGATAAACATGAAGCTGAAATTATACAAGGAAGAAGAAAT
ATAAATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.423230364
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017