Detail information of BGIOSGA002616_circ_igg.1


General Information
CircRNA Name BGIOSGA002616_circ_igg.1
ID in PlantcircBase osi_circ_011317
Alias Chr01:436180_436641(MH63RS2), Chr01:436180_436641(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 550796-551257  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCGACCACCCGCGCCACGGGGCGCCGTTCCGTCGCGGCGACAAGTACTTCTACTTTCACAAC
TCCGGACTCCAAGCCCAGAGCGTGCTCTACGTGCAGgagtctacctaccccacccctcttgctg
ccgccgcctctccatcctctcacgggccatgggttctgtcgccggcgacgccgcccgcctttct
tatccacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTCTACCTACCCCACCCCTCTTGCTGCCGCCGCCTCTCCATCCTCTCACGGGCCATGGGTTC
TGTCGCCGGCGACGCCGCCCGCCTTTCTTATCCACCCACTCGCCGCGACGATTCCGTCGTCGAC
ATGTACCATGGCGTCCCTGTCACCGACCCTTACCGTTGGTAAGTACTCCAACCTTGCTTCTTGG
GGGAGGTCTTATATTTTTGGCTACTTATGTTGTGTGCGGCGTGCACGCAGGCTGGAGGACCCAG
AGTCGGAAGATACCAAAGAATTTGTGGCAAGTCAGGTGGAGCTAGCAGAGTCTGTGCTTGCGGG
CTGCTTTGACAGGGAGAACCTTCGCCATGAGGTCACTCGCCTCTTCGACCACCCGCGCCACGGG
GCGCCGTTCCGTCGCGGCGACAAGTACTTCTACTTTCACAACTCCGGACTCCAAGCCCAGAGCG
TGCTCTACGTGCAG
Conservation Information
Conserved circRNAs osa_circ_000094
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021