Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G13750_circ_g.2 |
ID in PlantcircBase | ath_circ_002423 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4716404-4717671 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G13750 |
Parent gene annotation |
Probable inactive purple acid phosphatase 1 |
Parent gene strand | - |
Alternative splicing | AT1G13750_circ_g.3 AT1G13750_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G13750.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.194671508 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4717644-4716406(-) |
Potential amino acid sequence |
MVQPPRLCSAPVKFQYANFSNPRYTNTGTGSLKLQLINQRSDFSFALFSGGLLNPKLVAISNKV AFENPNAPVYPRLALGKEWDEMTVTWTSGYGLNLAEPVVEWGVKGGERKLSPAGTLTFARNSMC GAPARTVGWRDPGYIHTAFLKELWPNSKYTYRVGHRLSNGALIWSKEYQFKSSPFPGQNSVQQV VIFGDMGKAEVDGSSEYNDFQRASLNTTKQLIKDLKKTDAVFHIGDICYANGYLSQWDQFIAQI EPIASTVPYMIASASTCPGDNKMVQPPRLCSAPVKFQYANFSNPRYTNTGTGSLKLQLINQRSD FSFALFSGGLLNPKLVAISNKVAFENPNAPVYPRLALGKEWDEMTVTWTSGYGLNLAEPVVEWG VKGGERKLSPAGTLTFARNSMCGAPARTVGWRDPGYIHTAFLKELWPNSKYTYRVGHRLSNGAL IWSKEYQFKSSPFPGQNSVQQVVIFGDMGKAEVDGSSEYNDFQRASLNTTKQLIKDLKKTDAVF HIGDICYANGYLSQWDQFIAQIEPIASTVPYMIASASTCPGDNKMVQPPRLCSAPVKFQYANFS NPRYTNTGTGSLKLQLINQRSDFSFALFSGGLLNPKLVAISNKVAFENPNAPVYPRLALGKEWD EMTVTWTSGYGLNLAEPVVEWGVKGGERKLSPAGTLTFARNSMCGAPARTVGWRDPGYIHTAFL KELWPNSKYTYRVGHRLSNGALIWSKEYQFKSSPFPGQNSVQQVVIFGDMGKAEVDGSSEYNDF QRASLNTTKQLIKDLKKTDAVFHIGDICYANGYLSQWDQFIAQIEPIASTVPYMIASASTCPGD NKMVQPPRLCSAPVKFQYANFSNPRYTNTGTGSLKLQLINQRSDFSFALFSGGLLNPKLVAISN KVAFENPNAPVYPRLALGKEWDEMTVTWTSGYGLNLAEPVVEWGVKGGERKLSPAGTLTFARNS MCGAPARTVGWRDPGYIHTAFLKELWPNSKYTYRVGHRLSNGALIWSKEYQFKSSPFPGQNSVQ QVVIFGDMGKAEVDGSSEYNDFQRASLNTTKQLIKDLKKTDAVFHIGDICYANGYLSQWDQFIA QIEPIASTVPYMIA(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |