Detail information of BGIOSGA033488_circ_g.1


General Information
CircRNA Name BGIOSGA033488_circ_g.1
ID in PlantcircBase osi_circ_008739
Alias Chr10:24650641_24651659(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21811484-21812503  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033488
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033488-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCAAGCAAGCATGTGAAGATGCTCATAAGAATGGCTCACTTATTGCAGTTACAGCATCAGA
TGTGTCATGCATCAAGCGTTGCTACAATGATTTTTGggttgatttctcagggatggtggacgac
gagttccttcacagattgggcatacaaaagggtaccagaaaggttgtcaaccacgaggagagag
ggcgtgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGATTTCTCAGGGATGGTGGACGACGAGTTCCTTCACAGATTGGGCATACAAAAGGGTACC
AGAAAGGTTGTCAACCACGAGGAGAGAGGGCGTGTCTTGCGCGCCATGGATGGTTGCAGCTACA
AGGCTGCCGCTGGAGGCTCACTGTCCAACTCGCTTGTCGCGCTATCAAGGCTTGGTAGTAGCCG
CTCCACTAACTACCCCGAGCTTAGAATCGCGATGGCTGGCAGTGTGGGCAGCGACCCACTTGGT
AGTTTTTACAGGTAGTTCACTAGTTTGACAACATATTTTTGCACGTACTGATGTCTTAATTGCT
GCACTAGAAGCTTCAGAGTGTTGGCTGACATCACACTGTTGGTTGAATTGTTCTATTAGGGCAA
AATTGCGCCGTGCTAATTTGCATTTCTTGTCTAAGCCGGTCAAAGATGGGACTACTGGAACTGT
GATTGTTCTAACAACTCCAGATGCACAACGAACTATGCTTGCATATCAGGTCAGTTGATATGTT
TGTACTTCAGGGTTGTTATTCCCCCTTCTAGGGACTTCTGTTGCAATATCAGACTAAATTTTAA
TTTTTGAAGATGAGTAGTTTAACCAGGTCTGCTTTTAGTATGAATGTATCAATGAGAACCACCA
TCAGATATCAACTTTACTTGACAGGTCTTATTACTTGTTAGCTGTACTTTTTGACTCATTGAAC
ATTCACCGTGTATAATTTACTTACTGGACAACTATATAGAAGTGTTGCTGGCACTAATATAGGA
GTATGACCTTCACTGTTCCCTTTTTGCGTGTGTGTATTTCCAGGGAACATCATCAACTTTGAGT
TATGATTCAGATTTGGCCAGTCTAGTGTCCAAGTCAAATGTAGTAATTGTGGAAGGCTACCTAT
TTGAGCTACCTCACACGATCGAAGCCATCAAGCAAGCATGTGAAGATGCTCATAAGAATGGCTC
ACTTATTGCAGTTACAGCATCAGATGTGTCATGCATCAAGCGTTGCTACAATGATTTTTG
Conservation Information
Conserved circRNAs osa_circ_008123
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021