Plant Circular RNA Database

Detail information of BGIOSGA010444_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA010444_circ_g.1
					
						ID in PlantcircBase
						osi_circ_004911
					
						Alias
						3:22109727|22117308
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr3: 22109727-22117308  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA010444						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA010444_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA010444-TA:15

General Information
CircRNA Name	BGIOSGA010444_circ_g.1
ID in PlantcircBase	osi_circ_004911
Alias	3:22109727\|22117308
Organism	Oryza sativa ssp. indica
Position	chr3: 22109727-22117308 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA010444
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA010444_circ_g.2
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA010444-TA:15

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTATGTTGAATTGGCCAAGGTCTTCAGCGGTATTCCCATAAATTACAAGAGTAAGGCTGCGATA
AGTTCCACGAAGCACTAAATGATTTGTAACGATAGCcttgaagatctctctctctgacagtgaa
gtttcatcaactttgttgtttaaccaaataaagatcggacgaagaagaacaacagcacattcaa
tcttttca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CTATGTTGAATTGGCCAAGGTCTTCAGCGGTATTCCCATAAATTACAAGAGTAAGGCTGCGATA AGTTCCACGAAGCACTAAATGATTTGTAACGATAGCcttgaagatctctctctctgacagtgaa gtttcatcaactttgttgtttaaccaaataaagatcggacgaagaagaacaacagcacattcaa tcttttca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							22117013-22109729(-)
						
					

						Potential amino acid sequence
						
							MYQIPNVENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEAS
NELFDIWKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLV
DLQSAVVNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHL
EGLLSYNLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILME
IASSIEALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCR
PQEVAMITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVL
LSSLSSYNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSS
PGSNRKDAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVAD
PNNTDGQVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVI
YVVLMNCKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNE
TKEQYRNKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAP
GLFHCLLENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGC
QVEKHMNWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAV
VLLRPIFIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLD
HSLANVVSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQ
IPNVENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNEL
FDIWKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQ
SAVVNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGL
LSYNLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIAS
SIEALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQE
VAMITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSS
LSSYNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGS
NRKDAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNN
TDGQVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVV
LMNCKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKE
QYRNKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLF
HCLLENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVE
KHMNWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLL
RPIFIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLDHSL
ANVVSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQIPN
VENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNELFDI
WKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQSAV
VNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGLLSY
NLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIASSIE
ALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQEVAM
ITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSSLSS
YNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGSNRK
DAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNNTDG
QVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVVLMN
CKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKEQYR
NKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLFHCL
LENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVEKHM
NWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLLRPI
FIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLDHSLANV
VSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQIPNVEN
LIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNELFDIWKN
VNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQSAVVNI
VSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGLLSYNLT
IGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIASSIEALV
LSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQEVAMITE
LHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSSLSSYND
LDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGSNRKDAP
TRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNNTDGQVI
DNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVVLMNCKS
MLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKEQYRNKK
LLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLFHCLLEN
VEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWY
LHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLLRPIFIW
LNNKVDETSLSEREIFK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	22117013-22109729(-)
Potential amino acid sequence	MYQIPNVENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEAS NELFDIWKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLV DLQSAVVNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHL EGLLSYNLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILME IASSIEALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCR PQEVAMITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVL LSSLSSYNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSS PGSNRKDAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVAD PNNTDGQVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVI YVVLMNCKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNE TKEQYRNKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAP GLFHCLLENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGC QVEKHMNWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAV VLLRPIFIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLD HSLANVVSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQ IPNVENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNEL FDIWKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQ SAVVNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGL LSYNLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIAS SIEALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQE VAMITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSS LSSYNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGS NRKDAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNN TDGQVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVV LMNCKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKE QYRNKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLF HCLLENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVE KHMNWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLL RPIFIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLDHSL ANVVSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQIPN VENLIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNELFDI WKNVNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQSAV VNIVSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGLLSY NLTIGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIASSIE ALVLSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQEVAM ITELHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSSLSS YNDLDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGSNRK DAPTRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNNTDG QVIDNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVVLMN CKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKEQYR NKKLLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLFHCL LENVEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVEKHM NWYLHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLLRPI FIWLNNKVDETSLSEREIFKAIVTNHLVLRGTYRSLTLVIYGNTAEDLGQFNIELDLDHSLANV VSSPSEGKLEDLPPALHSSKFTFEESLSSLKPLSLQATELDLSIEVKKILLLALTMYQIPNVEN LIPNLQSAVISAVLKYMPASTNCMSRNWNRDPANCFAEDNVDSQGTSNTLLMEASNELFDIWKN VNSIVDNITFDDNGLAFRLEELPTTKHLFTLFDSCFPYYRNCSLLDLECPFQPLVDLQSAVVNI VSNLPSEELSSDGVNFLSSASIELAELLKMINMCVPIEDPSPVLTARRICKFGHLEGLLSYNLT IGLITSSKYSFLQFDADPYMLSLIQERGFFPLSAALLSSPVLRLASGPAAEILMEIASSIEALV LSLLFCRSGLSFLLGQPEATELILLSLQDGEDMSKTECMTLRQAFVLLSKGFFCRPQEVAMITE LHLKVGSAANRLLAVPPNSDELLWVLWELCAISRSDSGRQALLTLGFFPEAVSVLLSSLSSYND LDSVANKNGGSPLGHAIFHSTAEILEVLVADSTASSLKSWIGFAIDLHKALHSSSPGSNRKDAP TRLLEWIDAGVVYKRNGAVGLLRYSAILASGGDAHLSSGNVLVSDSMDVENVVADPNNTDGQVI DNLLGKLVADKYFDGVALCSTSVVQLTTAFRILAFISEEKAVASSLFEEGAINVIYVVLMNCKS MLERLSNSYDYLVDEGAELSSTTELLLDRTHEQTLVDLMIPSLVLLINLLHILNETKEQYRNKK LLTALLQLHREVSPRLAACAADLSFMFPSFAVSFGVVCHLVTSAIACWPLYNWAPGLFHCLLEN VEATNAAVPLGPKDACSLLCLLGDLFPDEGIWLWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWY LHPEHVSILLVRLMPQLDRLACVIDNFATSALTVIQDMLRIFIVRIASEKIECAVVLLRPIFIW LNNKVDETSLSEREIFK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA010444_circ_g.1

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