Detail information of AT2G41740_circ_g.3


General Information
CircRNA Name AT2G41740_circ_g.3
ID in PlantcircBase ath_circ_017871
Alias Ath_circ_FC1630, Ath_circ_FC1631
Organism Arabidpsis thaliana
Position chr2: 17412604-17415406  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G41740
Parent gene annotation VLN2
Parent gene strand -
Alternative splicing AT2G41740_circ_g.2 AT2G41740_circ_g.4 AT2G41740_circ_g.5 AT2G41740_circ_g.6 AT2G41740_circ_g.7 AT2G41740_circ_g.8 AT2G41740_circ_g.9 AT2G41740_circ_g.10 AT2G41740_circ_g.11
Support reads 13
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G41740.1:12
AT2G41740.2:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATATCTCAGCGCCACAGTCCAAGAGGTAGCATTTAGTGTTTTCCAGCATAGATTTGGATAGG
TCACCGTCTATTGGTTCCATCTTACCATCAGTGATGgatagctttagtggcatcccaagaaaag
taagtggtgaagaagcatggttcgttcccttcattgattttgtagattgggactttaggatgca
agccttcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1402
Transcript exons: 17412604-17412729,17412817-17412957,17413035-17413045,17
413169-17413316,17413428-17413556,17413747-17413884,1741
3977-17414045,17414123-17414191,17414570-17414728,174148
13-17414913,17415005-17415155,17415247-17415406
GATAGCTTTAGTGGCATCCCAAGAAAAGTAAGTGGTGAAGAAGCATGGTTCGTTCCCTTCATTG
ATTTTGTAGATTGGGACTTTAGGATGCAAGCCTTCCAAGGATCCAGCAAGATCTATGTATTTTT
GGCCAATCTCAAATACAGTTTGCTTTTCCTTAGGCTCCACACATTGACCAACCCAGACAAAAAC
TTCAGCATGGGTGTCTAGGAAATATATATCCTCAGTCAAGAGGTCATCTTGAGCAAAGTTGTAA
ATCTCCTCAACCTGAAACTTTCCTCTGTTGAAAGCAAATGAGAATAAGTGAGGATCCCTGATCG
TCTCAGAGGAAGCCTTCTTGCTGGTGAAATTCTGTTTTCCCCCAAGTGCAAACCAAAAGGTTGA
GCTCTCTGTTCCTTCTTTGGCATGCTTGAGAGTAATCCCGGGCTTCAAGAATTCAGCAACTTTA
GTGGCCAGTTCTAGCTGTTCATGCGTACTTTGATTTCCATGCCAAAGGAACATGGAAGTACCAG
ATTGCAGAAGGAAGCACTCATAAGAGTTCAAAGATGTTGCCACCGTTTCAACTTGCACAGCCTT
ATTATTGTGAACTCCGGTTCCAGATACTTGAACTAGTGCAATTGATTCTGGCGTGTAGGTTTCG
TCTGTTGACTCTGACTCTCCCATACTGCTTTTGTACCCAGAGCTCAAACCACCCTTTAAGACCA
CCATAGGTTGAAAAAGGGCAACAAATTGTGGAGGCTCTTTACCCTCGTATATACGGCCCTGCAC
AGGTCTTCCTTTTAACGAGTTTGACATTGTATTCGCCAGTCGAATTGCTGTATCTTGGTCCTCC
GGAATGCTTTTCTTTCCAAACCAACAACTCAAGAAATATTCGTCTTTCCTTTCCCCAGAATGAT
AGGTATAAAGGACCAAATAGCAGTCCCCAGAATAGAGCTTTCCAATATCTTCTTTAGGTAAGGG
AGTCTTGACTTTACCATTAACGTACCAAACCTCCAATTTTCCACCACTTTCAAGCAGAGGTGGA
ATATCCTCATTCACTGGTGCACTTTTTGCAATGCCCTTGAGCCCAACGCCTTGTTGCTTCAGTA
AAGCAGCGACTTTTCCTCGTCCTTCTTCGTTACCAGGAGTGGCCGAGCCTGATGGCCAAGAGTC
AAAGTTAGACTTGAAAGAATGGGACTCATAACCTTGGATTACACGAGTTACATGTGTTGCCTTT
GGCCTATTTTCACTAGCAAGGAATTCCTCAGCAGATTGACTAGCAGCTTTCCTCTCATCTACTT
GAGTGACACGGCCAACCCAGATATATATCTCAGCGCCACAGTCCAAGAGGTAGCATTTAGTGTT
TTCCAGCATAGATTTGGATAGGTCACCGTCTATTGGTTCCATCTTACCATCAGTGATG

Genomic sequence GATAGCTTTAGTGGCATCCCAAGAAAAGTAAGTGGTGAAGAAGCATGGTTCGTTCCCTTCATTG
ATTTTGTAGATTGGGACTTTAGGATGCAAGCCTTCCAAGGATCCAGCAAGATCTATGTATTTCT
GCTCATAAACTGTCTCAATGAACAAACAGTACAAGAAAAGAAAAAGAAGCAAAACAAGAAGCAA
AATTGATAAGGAAATAGTTACTTGGCCAATCTCAAATACAGTTTGCTTTTCCTTAGGCTCCACA
CATTGACCAACCCAGACAAAAACTTCAGCATGGGTGTCTAGGAAATATATATCCTCAGTCAAGA
GGTCATCTTGAGCAAAGTTGTAAATCTCCTCAACCTGTTGCAGAGCATATTGTTAAGAAGGGTA
GAATATGCAGAACAGCATCTCGAGTAATGAAAGTTGTATAATCTCACCTGAAACTTTCCTGCGG
GGATCCAGGCAGACGCATATAAAAGAAAAATGATACAGTTAGAAGGATACAGGACATTCTCAAC
TTCTCAGTATATATTTGTAAGAAATCACAATTATTATCCTATTAAACATTCACCTCTGTTGAAA
GCAAATGAGAATAAGTGAGGATCCCTGATCGTCTCAGAGGAAGCCTTCTTGCTGGTGAAATTCT
GTTTTCCCCCAAGTGCAAACCAAAAGGTTGAGCTCTCTGTTCCTTCTTTGGCATGCTTGAGAGT
AATCCCGGGCTGATTAACAAAAAGACATTTTCTATTATGAGTTCCGTGTAAAACTGTAAAGCAC
CTATTTGGAAAGATTTAAGATAAACTGAAAACAACACAGTACAACCAGAAACTAACCTTCAAGA
ATTCAGCAACTTTAGTGGCCAGTTCTAGCTGTTCATGCGTACTTTGATTTCCATGCCAAAGGAA
CATGGAAGTACCAGATTGCAGAAGGAAGCACTCATAAGAGTTCAAAGATGTTGCCACCTAATGG
AAGTATTGCAAACACACAATTATGAGTCAAAATAGCAAATCATAGAATATTATGTATCGCCTAA
GTCGCTTCTAATACAAAGCTTAACAATAACTACACACCTTTATTCAATTTGCAATATTTCACAA
ATAAGAAAACTAAACTTTACTACTTAGAAAGAAAGAAGCTAGGGTGGTCACGTACCGTTTCAAC
TTGCACAGCCTTATTATTGTGAACTCCGGTTCCAGATACTTGAACTAGTGCAATTGATTCTGGC
GTGTAGGTTTCGTCTGTTGACTCTGACTCTCCCATACTGCTTTTGTACCCAGAGCTCAAACCAC
CCTAAAAAGTCCATGTAAGCCATATTAATCACTGTATATTCTCTTGCGACTAAAATCAACTTCA
TCCTCATCTTGTAAACAGCATACAAATACCTTTAAGACCACCATAGGTTGAAAAAGGGCAACAA
ATTGTGGAGGCTCTTTACCCTCGTATATACGGCCCTACAAGAAGACCCCCATTAGTAATCGATC
TTCCAGTACTAGTCATCATTGCTTTCAATAAAAATAAAACTTTGTACCTGCACAGGTCTTCCTT
TTAACGAGTTTGACATTGTATTCGCCAGTCGAATTGCTGTATCTTGGTCCTCCTGGATAAGAGA
GAAATCAGAACTTTTAGATGGCTAAACTTAAGTTAAGTCGAATTTCTGATATCCATAACATTTA
TATGTTCATATATAGCTAACTTACAATACACTAATGATATCAGGACTCAATAATATTCAAAGCT
AAAACTGCAGCGCACTCACAAATATGAATCATGCAACAGTACCATTTTGCAACATTAACTGGTT
ACCCTCAATACTCAGAAGGGAAATACAAAGTTCTACAGTCACAACCAGGCAATACCAGGAAGAA
ACTAAGATAGCCAATATAAAAGTTAGAAATAGAGAAATTAACTGAAATGGAGGATTATACAGTA
TGTATACTAAGGATTCACATTCTGTTATGATTTAGATAAAAATTACCGGAATGCTTTTCTTTCC
AAACCAACAACTCAAGAAATATTCGTCTTTCCTTTCCCCAGAATGATAGGTATAAAGGACCAAA
TAGCAGTCCCCAGAATAGAGCTTTCCAATATCTTCTTTAGGTAAGGGAGTCTTGACTTTACCAT
TAACGTACCAAACCTGATACATAGACATAATGAATTATCAGAATGGATACATTCATAGCCAAAT
GTGTAAAATACCCGGAACATGTCACAAACAGACCTCCAATTTTCCACCACTTTCAAGCAGAGGT
GGAATATCCTCATTCACTGGTGCACTTTTTGCAATGCCCTTGAGCCCAACGCCTTGTTGCTTCA
GTAAAGCTAGAGAAATGGGGCATTGAAAATAGTCAGTCAGGGCTACAAGACCGTCAATGTTTTC
TATAAAGATTTGAGTTTCATAGTGGTGTTTTACCAGCGACTTTTCCTCGTCCTTCTTCGTTACC
AGGAGTGGCCGAGCCTGATGGCCAAGAGTCAAAGTTAGACTTGAAAGAATGGGACTCATAACCT
TGGATTACACGAGTTACATGTGTTGCCTTTGGCCTATTTTCACTAGCAAGGAATTCCTGTAGAT
GAAAGGTAAAAAGTGAGAAGCCATGATTGAGATAGATATTCTAAGGACCGGAGAAATGTTTTTA
ATAGATTTCCATTCTTTACCTCAGCAGATTGACTAGCAGCTTTCCTCTCATCTACTTGAGTGAC
ACGGCCAACCCAGATATATATCTCAGCGCCACAGTCCAAGAGGTAGCATTTAGTGTTTTCCAGC
ATAGATTTGGATAGGTCACCGTCTATTGGTTCCATCTTACCATCAGTGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.180117993
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a