Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc12g021290.1_circ_g.2 |
ID in PlantcircBase | sly_circ_003591 |
Alias | 12:15390991|15391501 |
Organism | Solanum lycopersicum |
Position | chr12: 15390991-15391501 JBrowse» |
Reference genome | SL2.50.38 |
Type | e-circRNA |
Identification method | Segemehl, CIRI, circseq_cup |
Parent gene | Solyc12g021290.1 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Solyc12g021290.1_circ_g.1 Solyc12g021290.1_circ_igg.1 Solyc12g021290.1_circ_igg.3 |
Support reads | 27 |
Tissues | fruit |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Solyc12g021290.1.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.618480979 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15391455-15391450(+) 15391471-15391184(+) 15391040-15391489(-) 15391436-15390993(-) |
Potential amino acid sequence |
MVAFLDVGADESYVHIHLEAAADTKIGSTGLHFKSNTLGNASVQLRSQTTRLASTFHALIPPSA VPMRSSRSDLHSHSSDMISAPQ*(+) MLVLMSHMSISISKQQQIRKLAPQGCILNPTRLGMLLCN*(+) MQPCGANFRICCCFEMDMDI*(-) MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVSAAASR WIWTYDSSAPTSRNATIYCGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEA FPSVLDLKCSPVEPIFVSAAASRWIWTYDSSAPTSRNATIYCGAEIMSLEWECKSDRLLLIGTA DGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVSAAASRWIWTYDSSAPTSRNATIY CGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVS AAASR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zuo et al., 2016; Tan et al., 2017; Yin et al., 2018 |