Detail information of Solyc12g021290.1_circ_g.2


General Information
CircRNA Name Solyc12g021290.1_circ_g.2
ID in PlantcircBase sly_circ_003591
Alias 12:15390991|15391501
Organism Solanum lycopersicum
Position chr12: 15390991-15391501  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI, circseq_cup
Parent gene Solyc12g021290.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc12g021290.1_circ_g.1 Solyc12g021290.1_circ_igg.1 Solyc12g021290.1_circ_igg.3
Support reads 27
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc12g021290.1.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGTCAGATTTGCACTCCCACTCAAGTGACATGATCTCTGCCCCACAATAGATGGTTGCATTT
CTTGATGTTGGTGCTGATGAGTCATATGTCCATATCcatctcgaagcagcagcagatacgaaaa
ttggctccacagggctgcattttaaatccaacacgctgtatccgggaaaacatgaaacgagaag
gataaaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 261
Transcript exons: 15390991-15391053,15391163-15391257,15391399-15391501
CATCTCGAAGCAGCAGCAGATACGAAAATTGGCTCCACAGGGCTGCATTTTAAATCCAACACGC
TTGGGAATGCTTCTGTGCAACTAAGATCACAAACAACACGTTTAGCATCGACATTCCATGCTTT
GATTCCTCCATCAGCTGTGCCTATGAGAAGCAGTCGGTCAGATTTGCACTCCCACTCAAGTGAC
ATGATCTCTGCCCCACAATAGATGGTTGCATTTCTTGATGTTGGTGCTGATGAGTCATATGTCC
ATATC

Genomic sequence CATCTCGAAGCAGCAGCAGATACGAAAATTGGCTCCACAGGGCTGCATTTTAAATCCAACACGC
TGTATCCGGGAAAACATGAAACGAGAAGGATAAAATAACAAGTAAGACGGTGTCCAAGTATTTC
ATTTTTTCAGAAAGAAGAAAGTAGATCCCATGAGTGTGAAGAACCTTGGGAATGCTTCTGTGCA
ACTAAGATCACAAACAACACGTTTAGCATCGACATTCCATGCTTTGATTCCTCCATCAGCTGTG
CCTATGAGAAGCTTTTCTCAAGATGAACATTAGTTCCAGAAGCTTTAGACTAATCCAGTAATGA
AGCTAGCAAATATACCAATTAACATGAAAAAGAAACAAGAACCATGGAACCTAATAATGTATGT
CTACTATATCGATAGTGTCTATACCAGTCGGTCAGATTTGCACTCCCACTCAAGTGACATGATC
TCTGCCCCACAATAGATGGTTGCATTTCTTGATGTTGGTGCTGATGAGTCATATGTCCATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.618480979
Functional Information
Coding potential Y
Potential coding position 15391455-15391450(+)
15391471-15391184(+)
15391040-15391489(-)
15391436-15390993(-)
Potential amino acid sequence MVAFLDVGADESYVHIHLEAAADTKIGSTGLHFKSNTLGNASVQLRSQTTRLASTFHALIPPSA
VPMRSSRSDLHSHSSDMISAPQ*(+)
MLVLMSHMSISISKQQQIRKLAPQGCILNPTRLGMLLCN*(+)
MQPCGANFRICCCFEMDMDI*(-)
MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVSAAASR
WIWTYDSSAPTSRNATIYCGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEA
FPSVLDLKCSPVEPIFVSAAASRWIWTYDSSAPTSRNATIYCGAEIMSLEWECKSDRLLLIGTA
DGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVSAAASRWIWTYDSSAPTSRNATIY
CGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLSCTEAFPSVLDLKCSPVEPIFVS
AAASR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA