Detail information of AT2G31955_circ_g.1


General Information
CircRNA Name AT2G31955_circ_g.1
ID in PlantcircBase ath_circ_015998
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13584621-13586205  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT2G31955
Parent gene annotation CNX2
Parent gene strand -
Alternative splicing AT2G31955_circ_g.2 AT2G31955_circ_g.3
Support reads 5
Tissues inflorescences
Exon boundary   No-No
Splicing signals   AC-TT
Number of exons covered AT2G31955.4:4
AT2G31955.6:4
AT2G31955.3:5
AT2G31955.5:5
AT2G31955.2:5
AT2G31955.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATCAACTTGATGAGCTGCATAACTACTGCTAAATAAACGCTCACTAGTAGTAGTAGTAATG
GTTCTCGTTACTGAACCTGAACCAACTTCAGAACCAacgttcaccggagcttagccaccaatgt
gtatcattggtctattagctgttttagcaatgtcaagcattccagcgtgtgcagctttctttct
cttcacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGTTCACCGGAGCTTAGCCACCAATGTGTATCATTGGTCTATTAGCTGTTTTAGCAATGTCAA
GCATTCCAGCGTGTGCAGCTTTCTTTCTCTTCACCTGAAACCCATTGTGAATTTTAAGTCAATA
CAGAAACGAAAAACAGAGGAAAGATTTCTTGACTGGTTCGTAAAATCAGATGAAGCAACTAAAT
ACTTACAGCAGCGCCTATAATTTCCCTTAGCGCCTCATCATCAGCACCAGACCGGAGAGGATCT
CTCAGACTAACCTGTTCACAAGAAATCATCGGGCGAAACAAAATGATCGTCACATTATTGAGAA
GCAACCACGAATACTCATGTTTACCGGTACTCAAGTTATTGCACACTTGTACATGTTCGCAGCC
ACTTGAATCAACAGTTACTGACTTTTAGCCATGGAAAAATTTGGAAATGTACTTTACCTCTGAA
GGACCAAACAAGCAAACTTTGAAGTTCCCATCTGCAAGAAGTCTCAATCTATTGCAGCCAGCAC
AGAAGTGTTCTGTCATGGATGTGATGAAAGAAACAGAACCGCAATGCCCATCGATCGTAAAGTT
CTTAGCTGTTTCAGTTGGGTGATCTTGCATTCGTTTTATGCTCGGAAACCTCTTGACCTGTTAC
CATAACAACTGAAACCAATCATGAAAATGCTCAAGGAAAAGTTGAGTAATCTCAAAAAAGGCTA
AACATTGAGAGAATTCTACCTTACCACTTTATCCATCACTTCTGCATAAGGTACAAGTTTCTTC
ACATTCCAAACATTTCCATCAAATGGCATAAACTCGATGAACCGGACATTGATTGGCTTGTCGC
GTGTCAACTCAACAAAATCACAAATCTCATCATCATTCAATCCCCTCATGATAACACAATTGAC
CTGTCAAAACCAAGAACGATTTGCAAAAACTCTTGAACATCAAATATCGTTCTGCTACATTCAA
ACAGAAAACATGAAGAAGGATTAATAAACATACTTTCACAGGATTGTATCCAAGCTCAATAGCA
GTATCAATCGATTTCATAACCCTATCATGCCCTTTACGTCTAGTCAGAAACTCAAACTTTGCTG
GAACCAGAGTATCCAAGCTGATATTCAGCGAATCAAGTCCGCATTCCTTAAGCCTTGGTAGTTT
TTTCGCAAGAGTGATACCGTTGGTAGTAATAGCCAAATTCTTCAACCCTTTTAAACTAGACAAC
TGCAGACAAATCTCTTCGATATCTTTCCTAACCGTAGGCTCGCCACCAGTCAACCGAATCTTGT
TAACACCAGCAGAAACAAAAAGACCAGCCAACCTAACAATCTCAGACTGTGACAACAACTGAGG
CTTAGGAGTAAGTTCCACACCTTCAGACGGCATACAATACTGACACCGGAGATTACACCGCTCA
GTCAAAGATATCCTCAAGTAGGTATGTAAGCGACCAAATTTATCAATCAACATGTCAGAGACAG
GATTGTCTTTTATCTGATCAACTTGATGAGCTGCATAACTACTGCTAAATAAACGCTCACTAGT
AGTAGTAGTAATGGTTCTCGTTACTGAACCTGAACCAACTTCAGAACCA
Conservation Information
Conserved circRNAs NA
PMCS 0.161159472
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017