Plant Circular RNA Database

Detail information of Os01g0808100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os01g0808100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_004495
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 34307524-34309521  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0808100						
					
						Parent gene annotation
						
							Similar to BZIP transcription factor. (Os01t0808100-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0808100-01:2

General Information
CircRNA Name	Os01g0808100_circ_g.1
ID in PlantcircBase	osa_circ_004495
Alias	NA
Organism	Oryza sativa
Position	chr1: 34307524-34309521 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0808100
Parent gene annotation	Similar to BZIP transcription factor. (Os01t0808100-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0808100-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTATCACCAGCGTGTGCATTAACTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCA
ACCACCGTGCATACTCCATGTCAAATGCCAAAGCTCctgccgtaggaagttttctagggtacca
agtttccccatagccattgccatttgtcccatgtagtttgcaacattaccagaagatcctgcag
ggccgaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1496
Transcript exons: 34307524-34307772,34308275-34309521
CTGCCGTAGGAAGTTTTCTAGGGTACCAAGTTTCCCCATAGCCATTGCCATTTGTCCCATGTAG
TTTGCAACATTACCAGAAGATCCTGCAGGGCCGAGAGATCCTGATGCCAGGGTCTCTGCAAGCG
ACTGTTGTAGTGCTTCCATCCCTTGAGAAAGAGCATCTTCAGCCTGTTGGGAGGATTGTTGCAG
GTTGGCTATGCCAGCAAGCTGCTGCTCTGTAAGAGGCTCTAATTGCCCTGCCAGTAACCACATC
TATGTGGCCATGCCATTGCCAGAAATGATTCCTTGGCTGTCACCTGTGCTAAACCTTTTGAGGA
TTGTTTTAAGTTGCCACTGACCCAGGAAGCTTACACAGAATTTCTGCTGCTAAAGGGAGAGCTG
GATGCTCTGTCCTTAGCAAGTCAGCAGGGGGATAATTGGAGTTTTATATGGGGCAGGAACAATT
ACACCTCAAAAGCTTTTTACAAGTTGAATTTTGCATCCACGCAACCTCCCAGACCTTTCCGATG
GATCTGGAAGAGCAAATGTGTGATGAAGATAAAAGTTTTCATATGGCTTCTTTTCTCTGATAGG
CTGAACACGAGAGACATGTTGGACAGGAGAAAATACGCCCCCCTAAATGCTGATCTTACTTGTG
TCTTATGCCCTTTGCATGACAGAGAAACTTTGTCTCACCTGTTCTTTCAATGCCCTTTTAGTAG
AAAATGTTGGCAGAAGCTGGGAATATCTTGGAACACTTCTCTAGAATTCTTTCAGAAAAAAGGA
TGCTGGTGCTAGCAAGATTGAGATTTCAGAAAAAAGGATTCTTGGAGATTTATTTCATTGCGTG
TTGGCACATTTGGAAGCAAAGGAATGGAAAGATTTTCCAGAATATAGATCCTTCATTTGACAGC
TGGTGGAATTCTTTTAAGCATGAAATTCTTCTACATATGTGTAGGATGAATGATGATCTTAGAC
AATTGGTTTCTAATTGGTTACAAACTTTATAGCTTCTATAGGGGGTTGTAGCCTTTTGTATTTT
TTCTTTTTTTCCCTGTAAAAACTTTGTTGGCTTCTATAAAATACACTACTGGGCCATTGCCTGG
TAGTATTCCTTTCAAAAAAAACAGAGCCTAAGAAAAATATTGGATCAATTAAAATAATATATAT
TCAGGTCAGCATTTTGCCTCCGGGTGAGGCTTCAAAATAAGTAGGCGCAATATAATAATAGTAT
ATTCTTACCTTAAGAAGCTCAGATGATCGGAAGCCACCTAGCCACATGAAGCACCTCTCAGCAG
GGGTTTTCCACATTCCCGACAGCACATGAAAAACGTCTGCTTTGGCTGCCACACCCTTGAGCTT
GAAAATTTCATTGTAGTGTGCCATAATACTATCAACTGTACTTTTGAGATCATTATCACCAGCG
TGTGCATTAACTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCAACCACCGTGCAT
ACTCCATGTCAAATGCCAAAGCTC
						
					

						Genomic sequence
						
							CTGCCGTAGGAAGTTTTCTAGGGTACCAAGTTTCCCCATAGCCATTGCCATTTGTCCCATGTAG
TTTGCAACATTACCAGAAGATCCTGCAGGGCCGAGAGATCCTGATGCCAGGGTCTCTGCAAGCG
ACTGTTGTAGTGCTTCCATCCCTTGAGAAAGAGCATCTTCAGCCTGTTGGGAGGATTGTTGCAG
GTTGGCTATGCCAGCAAGCTGCTGCTCTGTAAGAGGCTCTAATTGCCCTGCCAGTAACTGCAGC
AGAAATGTTGGTATAAAAGGAACTAGATGTCAGTCATCTTGAATTTGTTACGAACTGTGTGGAT
AGGGATAACTAGATTGGTGAATTCCACAAAAGACTATTTTTTTATAAAAGAAAAGGGAAAGCAA
AGCAAAACAATATAATATCTAATTAGAAATGTAGATCGTGAGCTTTTCTAGCTTTCAAGTCGGT
CAAAAGTCATGAAGGCAATTATTTAATCACAAAGACAAAAAGGACCTGTTTCGAGTGCAACAAA
TTTCACAAGAAATAGTTCATTTCACACAGAAATTGAGCGAGAAAAATTCTCTTATTCCAAACAG
AGCCTAAGACAGTTTTGAGGCTATCTCAGGTAACACAGTTTACTTCAGGGGAATTCTCTTAAAA
AATTCTCTTTCAGATTACTTCAGGGGAATTGCAAAGTGTGAGGTTATCTCAGGTAACACAGTTT
TGTTTTGGGACGACATGTGGAATGACCAAATTAGGAGCATCACTTACCCACATCTATGTGGCCA
TGCCATTGCCAGAAATGATTCCTTGGCTGTCACCTGTGCTAAACCTTTTGAGGATTGTTTTAAG
TTGCCACTGACCCAGGAAGCTTACACAGAATTTCTGCTGCTAAAGGGAGAGCTGGATGCTCTGT
CCTTAGCAAGTCAGCAGGGGGATAATTGGAGTTTTATATGGGGCAGGAACAATTACACCTCAAA
AGCTTTTTACAAGTTGAATTTTGCATCCACGCAACCTCCCAGACCTTTCCGATGGATCTGGAAG
AGCAAATGTGTGATGAAGATAAAAGTTTTCATATGGCTTCTTTTCTCTGATAGGCTGAACACGA
GAGACATGTTGGACAGGAGAAAATACGCCCCCCTAAATGCTGATCTTACTTGTGTCTTATGCCC
TTTGCATGACAGAGAAACTTTGTCTCACCTGTTCTTTCAATGCCCTTTTAGTAGAAAATGTTGG
CAGAAGCTGGGAATATCTTGGAACACTTCTCTAGAATTCTTTCAGAAAAAAGGATGCTGGTGCT
AGCAAGATTGAGATTTCAGAAAAAAGGATTCTTGGAGATTTATTTCATTGCGTGTTGGCACATT
TGGAAGCAAAGGAATGGAAAGATTTTCCAGAATATAGATCCTTCATTTGACAGCTGGTGGAATT
CTTTTAAGCATGAAATTCTTCTACATATGTGTAGGATGAATGATGATCTTAGACAATTGGTTTC
TAATTGGTTACAAACTTTATAGCTTCTATAGGGGGTTGTAGCCTTTTGTATTTTTTCTTTTTTT
CCCTGTAAAAACTTTGTTGGCTTCTATAAAATACACTACTGGGCCATTGCCTGGTAGTATTCCT
TTCAAAAAAAACAGAGCCTAAGAAAAATATTGGATCAATTAAAATAATATATATTCAGGTCAGC
ATTTTGCCTCCGGGTGAGGCTTCAAAATAAGTAGGCGCAATATAATAATAGTATATTCTTACCT
TAAGAAGCTCAGATGATCGGAAGCCACCTAGCCACATGAAGCACCTCTCAGCAGGGGTTTTCCA
CATTCCCGACAGCACATGAAAAACGTCTGCTTTGGCTGCCACACCCTTGAGCTTGAAAATTTCA
TTGTAGTGTGCCATAATACTATCAACTGTACTTTTGAGATCATTATCACCAGCGTGTGCATTAA
CTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCAACCACCGTGCATACTCCATGTC
AAATGCCAAAGCTC
						
					

			
		

Sequences
Splice junction sequence	TTATCACCAGCGTGTGCATTAACTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCA ACCACCGTGCATACTCCATGTCAAATGCCAAAGCTCctgccgtaggaagttttctagggtacca agtttccccatagccattgccatttgtcccatgtagtttgcaacattaccagaagatcctgcag ggccgaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1496 Transcript exons: 34307524-34307772,34308275-34309521 CTGCCGTAGGAAGTTTTCTAGGGTACCAAGTTTCCCCATAGCCATTGCCATTTGTCCCATGTAG TTTGCAACATTACCAGAAGATCCTGCAGGGCCGAGAGATCCTGATGCCAGGGTCTCTGCAAGCG ACTGTTGTAGTGCTTCCATCCCTTGAGAAAGAGCATCTTCAGCCTGTTGGGAGGATTGTTGCAG GTTGGCTATGCCAGCAAGCTGCTGCTCTGTAAGAGGCTCTAATTGCCCTGCCAGTAACCACATC TATGTGGCCATGCCATTGCCAGAAATGATTCCTTGGCTGTCACCTGTGCTAAACCTTTTGAGGA TTGTTTTAAGTTGCCACTGACCCAGGAAGCTTACACAGAATTTCTGCTGCTAAAGGGAGAGCTG GATGCTCTGTCCTTAGCAAGTCAGCAGGGGGATAATTGGAGTTTTATATGGGGCAGGAACAATT ACACCTCAAAAGCTTTTTACAAGTTGAATTTTGCATCCACGCAACCTCCCAGACCTTTCCGATG GATCTGGAAGAGCAAATGTGTGATGAAGATAAAAGTTTTCATATGGCTTCTTTTCTCTGATAGG CTGAACACGAGAGACATGTTGGACAGGAGAAAATACGCCCCCCTAAATGCTGATCTTACTTGTG TCTTATGCCCTTTGCATGACAGAGAAACTTTGTCTCACCTGTTCTTTCAATGCCCTTTTAGTAG AAAATGTTGGCAGAAGCTGGGAATATCTTGGAACACTTCTCTAGAATTCTTTCAGAAAAAAGGA TGCTGGTGCTAGCAAGATTGAGATTTCAGAAAAAAGGATTCTTGGAGATTTATTTCATTGCGTG TTGGCACATTTGGAAGCAAAGGAATGGAAAGATTTTCCAGAATATAGATCCTTCATTTGACAGC TGGTGGAATTCTTTTAAGCATGAAATTCTTCTACATATGTGTAGGATGAATGATGATCTTAGAC AATTGGTTTCTAATTGGTTACAAACTTTATAGCTTCTATAGGGGGTTGTAGCCTTTTGTATTTT TTCTTTTTTTCCCTGTAAAAACTTTGTTGGCTTCTATAAAATACACTACTGGGCCATTGCCTGG TAGTATTCCTTTCAAAAAAAACAGAGCCTAAGAAAAATATTGGATCAATTAAAATAATATATAT TCAGGTCAGCATTTTGCCTCCGGGTGAGGCTTCAAAATAAGTAGGCGCAATATAATAATAGTAT ATTCTTACCTTAAGAAGCTCAGATGATCGGAAGCCACCTAGCCACATGAAGCACCTCTCAGCAG GGGTTTTCCACATTCCCGACAGCACATGAAAAACGTCTGCTTTGGCTGCCACACCCTTGAGCTT GAAAATTTCATTGTAGTGTGCCATAATACTATCAACTGTACTTTTGAGATCATTATCACCAGCG TGTGCATTAACTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCAACCACCGTGCAT ACTCCATGTCAAATGCCAAAGCTC
Genomic sequence	CTGCCGTAGGAAGTTTTCTAGGGTACCAAGTTTCCCCATAGCCATTGCCATTTGTCCCATGTAG TTTGCAACATTACCAGAAGATCCTGCAGGGCCGAGAGATCCTGATGCCAGGGTCTCTGCAAGCG ACTGTTGTAGTGCTTCCATCCCTTGAGAAAGAGCATCTTCAGCCTGTTGGGAGGATTGTTGCAG GTTGGCTATGCCAGCAAGCTGCTGCTCTGTAAGAGGCTCTAATTGCCCTGCCAGTAACTGCAGC AGAAATGTTGGTATAAAAGGAACTAGATGTCAGTCATCTTGAATTTGTTACGAACTGTGTGGAT AGGGATAACTAGATTGGTGAATTCCACAAAAGACTATTTTTTTATAAAAGAAAAGGGAAAGCAA AGCAAAACAATATAATATCTAATTAGAAATGTAGATCGTGAGCTTTTCTAGCTTTCAAGTCGGT CAAAAGTCATGAAGGCAATTATTTAATCACAAAGACAAAAAGGACCTGTTTCGAGTGCAACAAA TTTCACAAGAAATAGTTCATTTCACACAGAAATTGAGCGAGAAAAATTCTCTTATTCCAAACAG AGCCTAAGACAGTTTTGAGGCTATCTCAGGTAACACAGTTTACTTCAGGGGAATTCTCTTAAAA AATTCTCTTTCAGATTACTTCAGGGGAATTGCAAAGTGTGAGGTTATCTCAGGTAACACAGTTT TGTTTTGGGACGACATGTGGAATGACCAAATTAGGAGCATCACTTACCCACATCTATGTGGCCA TGCCATTGCCAGAAATGATTCCTTGGCTGTCACCTGTGCTAAACCTTTTGAGGATTGTTTTAAG TTGCCACTGACCCAGGAAGCTTACACAGAATTTCTGCTGCTAAAGGGAGAGCTGGATGCTCTGT CCTTAGCAAGTCAGCAGGGGGATAATTGGAGTTTTATATGGGGCAGGAACAATTACACCTCAAA AGCTTTTTACAAGTTGAATTTTGCATCCACGCAACCTCCCAGACCTTTCCGATGGATCTGGAAG AGCAAATGTGTGATGAAGATAAAAGTTTTCATATGGCTTCTTTTCTCTGATAGGCTGAACACGA GAGACATGTTGGACAGGAGAAAATACGCCCCCCTAAATGCTGATCTTACTTGTGTCTTATGCCC TTTGCATGACAGAGAAACTTTGTCTCACCTGTTCTTTCAATGCCCTTTTAGTAGAAAATGTTGG CAGAAGCTGGGAATATCTTGGAACACTTCTCTAGAATTCTTTCAGAAAAAAGGATGCTGGTGCT AGCAAGATTGAGATTTCAGAAAAAAGGATTCTTGGAGATTTATTTCATTGCGTGTTGGCACATT TGGAAGCAAAGGAATGGAAAGATTTTCCAGAATATAGATCCTTCATTTGACAGCTGGTGGAATT CTTTTAAGCATGAAATTCTTCTACATATGTGTAGGATGAATGATGATCTTAGACAATTGGTTTC TAATTGGTTACAAACTTTATAGCTTCTATAGGGGGTTGTAGCCTTTTGTATTTTTTCTTTTTTT CCCTGTAAAAACTTTGTTGGCTTCTATAAAATACACTACTGGGCCATTGCCTGGTAGTATTCCT TTCAAAAAAAACAGAGCCTAAGAAAAATATTGGATCAATTAAAATAATATATATTCAGGTCAGC ATTTTGCCTCCGGGTGAGGCTTCAAAATAAGTAGGCGCAATATAATAATAGTATATTCTTACCT TAAGAAGCTCAGATGATCGGAAGCCACCTAGCCACATGAAGCACCTCTCAGCAGGGGTTTTCCA CATTCCCGACAGCACATGAAAAACGTCTGCTTTGGCTGCCACACCCTTGAGCTTGAAAATTTCA TTGTAGTGTGCCATAATACTATCAACTGTACTTTTGAGATCATTATCACCAGCGTGTGCATTAA CTGCAGCCCTCAACTCATTTATATGTTTGTTATGCTCCTCCAACCACCGTGCATACTCCATGTC AAATGCCAAAGCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.151684468

Conservation Information
Conserved circRNAs	NA
PMCS	0.151684468

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34309332-34307584(+)
34308282-34309464(-)
						
						Potential amino acid sequence
						
							MKNVCFGCHTLELENFIVVCHNTINCTFEIIITSVCINCSPQLIYMFVMLLQPPCILHVKCQSS
CRRKFSRVPSFPIAIAICPM*(+)
MWLLAGQLEPLTEQQLAGIANLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVAN
YMGQMAMAMGKLGTLENFLRQELWHLTWSMHGGWRSITNI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34309332-34307584(+) 34308282-34309464(-)
Potential amino acid sequence	MKNVCFGCHTLELENFIVVCHNTINCTFEIIITSVCINCSPQLIYMFVMLLQPPCILHVKCQSS CRRKFSRVPSFPIAIAICPM(+) MWLLAGQLEPLTEQQLAGIANLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVAN YMGQMAMAMGKLGTLENFLRQELWHLTWSMHGGWRSITNI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0808100_circ_g.1

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