Detail information of BGIOSGA002509_circ_g.1


General Information
CircRNA Name BGIOSGA002509_circ_g.1
ID in PlantcircBase osi_circ_008916
Alias Chr01:939043_940182(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1060947-1062084  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA002509
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA002509-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTCCTCTCGACAGGCACATCTTCAGGAAGTGCAATGTGTTTCACCTTTTTCCCAGCGCCTG
ATGAGCTACCAACAGATGCGTACTGTGTGGAACCAAccaggaagttaaacggacatcagaagga
attttgatcaaattctgattttcaacagcactaagaggaatccaggtaacagatgaatctttga
agttgcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGAAGTTAAACGGACATCAGAAGGAATTTTGATCAAATTCTGATTTTCAACAGCACTAAGA
GGAATCCAGGTAACAGATGAATCTTTGAAGTTGCATGCCCGCAGAAAACTACCAAGTTGAACCT
TGATGAACTCGAATCTTTCTTTGGAGTACCCGATGGCATCCATCTTGTTGACCGCAACAATAAG
CTGTTCAACGCCGAAGCTTCTAATAAGCTGAGCATGTTCTTTTGTCTGGCCAACACTTTTCCCT
CCTTCACCGTCCATGCCAGCTTCAAATGAACCGGCAAGCATCAACAACAAGAATAGCTGCATCA
GCTTGCGTTGCGCCAGATATCATATTTGGTACAAAATCTTTATGGCCTGGAGAGTCAAGCAAAA
CTACACGGTACTTCTTGGTCTCCAAATAAGCCACAGCCACAGTCATTGTCACACCTCTTTCTCT
TTCTTCACTACTTTCATCCATAGCCCACGCATAAGCAAATGATCCTTTTCCCTGGTAAAAAATA
ATTTCCATAATACAAGAATATGAATGGAACATCAGGATCAAGTATAGTACAATAACAACAATAA
TAAACTTACTTTTTCTTTAGCCTCCTTCTCATTCTTGTGCATATCTTTTTTCGATATCCTTCCT
AACAGATGTAGCAGTCTCCCAGAGAGTGTTGACTTGCCAGAATCAACATGACCTACCTAAACAA
ATTGTTCGTAGACAGTAACCTATTTAGACAAAGCACTTTTAGAATAACAAAATTGTTACGGAAC
ATATGCCATATTCAGAACAGAAGATGAGTATAGCATACTATTGCAAGGTTTAGTTGGCTCAGCA
CTCCTGATTCCTCATTAGCAAACATCCACTTCTCAGGCTTATATTCTTCAGGTAAATAAGGTTT
TGCAGTATCTACTTCATTCTTTTCTAAACCTAGCTTCTGTATGTCAGAAGAAAGTTTCTGGGCC
ACATCCTCATTCTGTGCAGAACTGGTAGCCCTACTACTCTGGTCCTCCTTCAGCTGAAAATGAT
CAGAAATCAATTGAGCTGTCCTCTCGACAGGCACATCTTCAGGAAGTGCAATGTGTTTCACCTT
TTTCCCAGCGCCTGATGAGCTACCAACAGATGCGTACTGTGTGGAACCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021