Detail information of AT2G10950_circ_g.1


General Information
CircRNA Name AT2G10950_circ_g.1
ID in PlantcircBase ath_circ_013150
Alias 2:4315525-4316383
Organism Arabidpsis thaliana
Position chr2: 4315525-4316383  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G10950
Parent gene annotation BSD domain-containing protein
Parent gene strand -
Alternative splicing NA
Support reads 1/1/1/3/2
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G10950.1:2
AT2G10950.2:2
AT2G10950.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCATGTAACTACTAACTTGATTCTTCACAGCTACAAGGCCAGGAACCAAATCTTCAATGGCTG
ATGCATGTGCCCTTTGAGCCTCAGACAGTTCAAATTctttaaacgttaatcagaatcgccaatt
ggaagccagtcactggaatcaccttccgaatccttgctatgtccaacttggctcttgctgagct
gaacccag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 605
Transcript exons: 4315525-4315944,4316199-4316383
CTTTAAACGTTAATCAGAATCGCCAATTGGAAGCCAGTCACTGGAATCACCTTCCGAATCCTTG
CTATGTCCAACTTGGCTCTTGCTGAGCTGAACCCAGCTTGACCCGCTTGCGTTTGATGCTGGTC
TTTTCAGTGTACTCCTGTTGGGACTTGGCTTCTCCGAGAGATCATCGACATCTAAATCACTAAA
GGAGATTACCTCTTCATCTCTGAAACTCCTCCGTTGTTCTTCAGATGACTCATCACTTATCTCC
CTTTGCTCAATTTTTAGAGTCTCTATCTTGTCAATGACTCCCTCAACGGTTTCTGTTTCCCTAC
TGCTACCTTCTTCAGGAGTTTCGTGACCAGTAGTGCTCTTGCTTGACCCTGTCTCTTTCTTTTG
CAGCTTTAGTAAAAGTTGATCCCTTGTTTCAAATACCTTGCATGTTGCTAAGAGTTCAAAATCA
TGCCCATTCAGTCTCGGCATCAGCAAAATAAAATAAATCAGCCAGAAGTGTTCATCATCCATGT
AACTACTAACTTGATTCTTCACAGCTACAAGGCCAGGAACCAAATCTTCAATGGCTGATGCATG
TGCCCTTTGAGCCTCAGACAGTTCAAATT

Genomic sequence CTTTAAACGTTAATCAGAATCGCCAATTGGAAGCCAGTCACTGGAATCACCTTCCGAATCCTTG
CTATGTCCAACTTGGCTCTTGCTGAGCTGAACCCAGCTTGACCCGCTTGCGTTTGATGCTGGTC
TTTTCAGTGTACTCCTGTTGGGACTTGGCTTCTCCGAGAGATCATCGACATCTAAATCACTAAA
GGAGATTACCTCTTCATCTCTGAAACTCCTCCGTTGTTCTTCAGATGACTCATCACTTATCTCC
CTTTGCTCAATTTTTAGAGTCTCTATCTTGTCAATGACTCCCTCAACGGTTTCTGTTTCCCTAC
TGCTACCTTCTTCAGGAGTTTCGTGACCAGTAGTGCTCTTGCTTGACCCTGTCTCTTTCTTTTG
CAGCTTTAGTAAAAGTTGATCCCTTGTTTCAAATACCTGTGCCGCACAATATAGTTATTAAAGT
TTCAGAAATAGGTACAATAGTAACTTGGGAAAAAATGCAGAGCATAAAAGATATAAAACAATCC
AATTTTAAAAGCATCAGGCAAAAATACATTTTTTCCTGAGGCTATACTTGTTCTTATTGCAATC
GGTTGAAGGGGTCATTATAGCATAAACGTTTACGATTTTAATAATATTGGATCAATACTGACAT
TTCAGAAGAATGTATTTCCAGTATACAGTCTTACCTTGCATGTTGCTAAGAGTTCAAAATCATG
CCCATTCAGTCTCGGCATCAGCAAAATAAAATAAATCAGCCAGAAGTGTTCATCATCCATGTAA
CTACTAACTTGATTCTTCACAGCTACAAGGCCAGGAACCAAATCTTCAATGGCTGATGCATGTG
CCCTTTGAGCCTCAGACAGTTCAAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.348719842
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020