Detail information of BGIOSGA014690_circ_igg.1


General Information
CircRNA Name BGIOSGA014690_circ_igg.1
ID in PlantcircBase osi_circ_014579
Alias Chr04:26749338_26753614(MH63RS2), Chr04:26771528_26775804(ZS97RS2), Chr04:26749338_26753614(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24899799-24904075  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ, find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAACACCTAAAAAACAAGGCCTAAAGGTGCAATTTTGAATTCGCGCAGCTCCCCGATAAATCA
AATGTTTCTGATTTTTGTTTCAAGATTTATCTGATCccagatgatgggaggcactcaggcacca
ggagtccaggagtggcgcgcgtacagctcgaacgggtaaaaagggcactgagaaagcgagtaaa
ctgaatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGATGATGGGAGGCACTCAGGCACCAGGAGTCCAGGAGTGGCGCGCGTACAGCTCGAACGGG
TAAAAAGGGCACTGAGAAAGCGAGTAAACTGAATCCTCAAGCTTAGGGTCTTCGGATGCAGCCT
GCGGGCACAATGGATGAATGGAAGATGCAGTCTGCGGGCACAACGGATGTCAGTAAAATACTGG
AGGAGGATTCCACGATTATCTATTCATCCGTCATCGAGTAATGTTAGAGCGACCTCACAGTCGT
GCACCTTCACTTCCTCGGGATGACTATACAGACGGATCATTTCTGAGGCAAAGGATGTGGCAGC
CAGTTTATGATCTCGACTTCTGCCATAACCATAGTTGAACCCACCAGTGATGTGGTAGCGCCGC
CGAGCACCTCCACGTCTGTTTGAACCAGCATCCCAGCTGCCACGCCCAGCAGACCTGATACTGC
TGCCTGCGTTGATTCCTCCTTGGCTTCAGTCCCCAGTTTGCAATGACGTTTTGTTTAATTCTTG
ATGCTTTGCTTCTCCTCAAGCTCAGCAGCCTCTTGCTGCTTTGTGCTCTGAACAAGTGAGCAGT
CTCCAGGGATGAACATTTCCTTTATCTGCTGTTTGTGCCCTTTCTTCACAAGCACCTTGATACA
CACCTTGCCACCATCCCCATCATTGATACTCACGGATGCATTTTCTCCTCCATTCTCTAGTTCA
GTGGCCCTTAAGTCCTTTGACCTTTCAAACACATTCATTGGTATCACCATGTTCAAAGTGGGTT
TGGCCCGCAGCTCCAACTTACGTGATTCCAGGCTCTCCTGTAAAAGGGCTTTCAGCCCCCGATC
AAAGTCTCGTTAGGATCAACTCATACATCCTCTTTTTTAACATGAACAATTTCTTCATCATCAA
AACCAACAGGCATGTTATCATCGCCATTGTCATCTGAGGAATTTCTTCATCATCAAAACCAACA
GGCATGTTATCATCGCCATTGTCATCCTCCTCAGATCTTCCATCGGATCTCCCTTCGCTTGGAA
AATCAGTGTCTTCATGTCCATCCTGATAGATGCTTCCATTTGAATAGCTCTCACTGCCAGTTCT
TCATTATCATTTCCATTTTCATCAATCCTGTCTCTTGAGCTCTTGTGATTAGCATCAAAAGAAA
CATAATCAGATTGTTTCGTCTGCTCTTTGCTGCCTGAGTGCCATTCATTTCCACATTTCTCAGC
TGATGCAACATACCCATTTGCTTCAAGCTCAATCAGAGCAACACTCAGTTCTTCCATAGATGAA
TATCTAGTCATGTTAGATCCTAGATGAGCAAACAAATCCTGCACTGCATGTAAAAGGAGTTAGC
TTGTAGTCACTGAAAGTACAGTAAGTTAAACAGTCTCAATGATCTAACATGCCACTGAAGTAAT
GCAGAACTGAGAGCTACAAAACAAGAGCAAGCACACAAAAGCAGTCCAGACCAAAGAAGGTACT
TTTACATGTCACCAACAACAAATATTTGTGCATAAGAAACTATAATGTTGGTATATCTGCTTAG
AAACATAGTAGTGATGCTCTATGCTGTTATCCTAGCAAATATAGATAACAAACATATAAAGCAA
TAATAATTCTGTTCCAAGTCAAGTTGTTGAGTGACTTTTACAAATATTGTATTATTGTAAGTTG
TGATTGCAGTGGATCCAGAATATTCTGTTAGTCGCCTAAATCTACAAATCTCAATGAATCTTCT
GCCTATTGTTGATATGACTTCCAAAGTACCCCCCTGCTTCATTATGAAGTAGAAGGTCAACATT
ACAGTTCATTAGTCCAGATTGCAGGAAAAAAACGTTGGAAACTTAGTACCTTACTACCAACTAC
AACCAGATTTTTTCTGCCCCCTTAAAACTCAGGCAGGCAGCAATTATGTAAAGAAAAGAGCTGA
AGGAGGAACCAATTTGGCCCCACCTTGCACCATACATTTAACATGGTGCATCTCACCAGCTCTT
CTCCACTTATATTGAATTTATAACCTAATGGCTACATATACCAGGAAGAATCAGAGAAATTCAT
GCTATGAAATTGCAACATCAAACTCTACATCACGCAGTAATGACCCTTTGCTAAGAACATATCT
CTGAAAACGCAACAAAAATATGTGAAGCTTTCTTTTAGAAGAGCCTCTATCAAAATAGCGTCCG
CAAGTCTGGAGAAGTGCAGTGATTAGCCTAATCCTGAAAAAAATCTTCTGGAGGGTCTAGCAGA
TCATGTTGCACAGCCACAGGATAAAGGGTAGATTCAGTGATAAGTGACAACATATCAGTTATTT
TAAGAGAGACAGTGAAGCATGCATGAAGCAAGAGGATTTTGTAACAAACACATTCTGGTTTGCA
GATAAGAAATACACACGGAAAGTTTCAGCGTACATAAGTTATATATTTTGCAATTTTAAGCAAG
AATGTTATCATATTAAAAAGTATGTAGTTCTTTAAGCCATTCTGAAATGAAGAAATGCACCAAG
AAACAACTAGAACTTGACATCATACATGCCAAGATCTGATTTTTCTTTTTCTAGATCAGCATAG
AAGATAAGAAAATAAAGTAAGGTGCTCCTATTTTGCAAGCACACTTACTTCAGGTGTTTTGTGA
CCAAATACAATGATAAGGTATAGTGTCTGAAATATAATAGATGAGCCAATATGCTCGTAGTTAT
ATAACTCCCCAAAAAATTGCATGTGGGCAAGCCGTTGTTGCTGCATTGAATAGTCATTCAGCTC
AAGCCCAACTCTTATTTCCTCTAGAACCTGAATCAAGATAAACAAAGTACAAAATCATCAGTGT
TCTAGTTAACCCATTAGAATAAAAACCATCATTAAATTAAGGGAATCATGATTTGATACTTGCT
GCTAAAGATGTAGATACCATATTTGTAATGAAAATCACCCTAGGAAGTAACAGTACACTGCTGA
TCTAAATTGAACACAAATAAATATATAAATTTCAAGTAAAACAAAACTGTAAAAAGATGGAATA
CCTTGCTAGTATTTCTTCTTACAAAAGAAGCAGGTCAGAGATCACAGAAATGCAACAAAGGTCA
TGCAAATAAACATACAAGTATGCAGAATAGGTTCATGTAAAAAGAAAAAGTATGCAGTATAGGT
CAACATACTGGCTTCATTAGTCGTAATGTTACTTCGCATGCCATATCATTTTCATGTAAGTACA
GAAGTTGCGTAGCTGCCTTCTCTTGGAATGGTCTGAGTCTGACTCAATTAAAGAAACTAACCTC
ATCTACCACAGCCACCGCAAAATCTTCATGATAGTGACTAAGACCAGCAGTTGAGCAATCAGAT
GAACTTGGCTATACTTTCCCCCATGAACCTTTAAAAAACATTTCAACAGATACGGTTCACACTC
AGACCAAGGTAACTTCTGTAGCTGATGAAGCACATAGTGAGCACTTGACTTGTCAAGACCATGA
AGAGCAGCTTCCTTATGTACTGCATAACAGTGGTTTGTTGGGAATATAAGTCAAATGCAATTAC
CAGTGAAGAGAACTAGAGAACATTTCAGAGAAGGAAGAAAATCCTACTCAATATAGAGGTGGTT
GAACTTTAGAGACTCTTGTGGATCTTTCTGGTGGTTTGCATAAGTAGTAGGCATTTTCTACAAG
TGTGTTGTGGCATGGATCCAAATTCTTGACATTTTTTAACCGCCAAAGTATCTCCAGCATGTTT
GACATGTGAATTGTAGTTTCCTGTAAACGATATAGAAAGCATCCGCAGGTCTCAAGAAGATTGC
AGGCCACATCAATGTTATGATGGCTGAAATCATCTAGGCTTGCCTGAAAGAACAGAATATCACA
TATCTAATTAAGTTCAAAACTTGTCAAACAGAGGCATTCATAACTAATTATGTTCCCTGTTCTC
AAGGCTGAATTTGTGTGTGGCAAGCTGGTTAGCATTTAGGTGCCTAAGTATAATGCACTAATTA
TTTTTCCATCTAGAACACAGGAGACAATTCTTAGCCAAACTGAAATCATATAAATTGTAACTCC
TGACAAGCAACACAGCACATGCAGAACTATACACTATTCAGTAGCAGCTAAAAGTTGGTAAAAC
AAACAAATAAGGAAATTGAGAAATTCAAACCAAGATACAATAAACAGGAAACTATTGATTCCAT
GTTGATGTGCATACCTTCAAACACCTAAAAAACAAGGCCTAAAGGTGCAATTTTGAATTCGCGC
AGCTCCCCGATAAATCAAATGTTTCTGATTTTTGTTTCAAGATTTATCTGATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR818f
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021