Detail information of Zm00001d029848_circ_g.1


General Information
CircRNA Name Zm00001d029848_circ_g.1
ID in PlantcircBase zma_circ_000678
Alias circ173
Organism Zea mays
Position chr1: 89930537-89935090  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d029848
Parent gene annotation Branched-chain-amino-acid aminotransferase
Parent gene strand +
Alternative splicing Zm00001d029848_circ_g.2
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d029848_T004:7
Zm00001d029848_T007:5
Zm00001d029848_T002:8
Zm00001d029848_T003:8
Zm00001d029848_T006:7
Zm00001d029848_T001:6
Zm00001d029848_T005:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTTCAGTGGATGAACTGCTTGATGCTGATGAGGTATTCTGCACAGGAACTGCTGTTGTGGT
GTCTCCTGTTGGGAGCATTACATATCAAGGGAAAAGgattcagaatcgtctttattcgatctcg
tcattcccactaaaggctggacctgtaagggcatgcagagctttagcaagcaactacacgtatg
acatttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTCAGAATCGTCTTTATTCGATCTCGTCATTCCCACTAAAGGCTGGACCTGTAAGGGCATGC
AGAGCTTTAGCAAGCAACTACACGTATGACATTTCCATTATAGTTATAGCATGCCTGGTTGGCA
TTTACCTGTCATTGATACTTTCTTGCACCGAATTGTCCACGGTTGTATCCATGTCCTCGATCTA
GTTACGATCTTCTGATGTCATGGCACTTACTGCTTAGCAGGCAAACATCTGAAACAGTTGATTT
GGACTGGGAGAACCTGGGTTTTGGGATTGTGCAAACTGATTATATGTATATTGCTAAGTGCGGG
ACAGACGGGAATTTTTCTGAGGGTGAAATGGTGCCTTTTGGACCTATAGCGCTGAGTCCATCTT
CTGGAGTCCTAAATTATGGACAGGTTAGTAGGATGTATAGATTCTTTGTTTCATATATTCTGTG
GTAGATCAGATTAACTGAAAACAGAGTACTTTTGAAGGCATAAATACTCCTATTTTTTGCGGTA
AAATGACGTTGAGTCTGATTTGTAGGGATTGTTTGAGGGCCTAAAGGCGTATAAGAAAACTGAT
GGATCCATCCTATTATTTCGCCCAGAGGAAAATGCTGAGAGGATGCGGACAGGTGCTGAGAGGA
TGTGCATGCCTGCACCCTCTGTCGAGCAGTTTATTGATGCAGTAAAACAAACCGTTCTTGCAAA
TAAGAGATGGGTAAATTCACTGGATTGATACAAAGTTAGGGTACTTTTGTAGTGCTATACCCAT
TACTTATGATCATGATTTAATTGGTCATTAAATATCTTATGCTTCCAGATTCCTCCTACTGGTA
AAGGTTCTCTGTATATTAGGCCCTTACTTATGGGAAGTGGGGCTGTTCTTGGTCTTGCACCTGC
TCCTGAGTATACATTCATTATATTTGTCTCTCCTGTTGGAAACTACTTTAAGGTTGGTACTGGT
TGTTTTAAAATTCTGTTTCCACTATTTTTGTAAAATACTTTTTAAAATAAATGACCATTAGATT
ATAAATTGACCTTTTTCCCCTATATATCATGTGCTATGTGCCCCATGGCCTTGTGCTGTGGAAT
TAAAGTTATGCTGCAACTAGAATTATGGTTATTGTTGTGCCGTTATTGGTTATGTTAAATCAGC
CTATGGAGTTGTTGGATGTTGATGCGTGATGCGTCAAGATAAAAGTTATTTGTTGAATATATTC
ACTGGTGTCTGCAGGAAGGTTTAGCACCAATAAATTTGATAGTTGAAGACAAGTTCCATCGTGC
TACTCCTGGTGGTACTGGGGGTGTGAAGACCATAGGAAATTATGCTTCGGTAATTCATCTATTC
TACTTTGCTGCGCAAGTTATTGAAGCTACACCACTTAATTTCTGCAACGCTGCCCTGATACTGC
TGTTGCCTATTTACATACTAATCTAGCTACTTTTTAGCTTCAAATATTCAAATTGCAAAAAAGC
CAACAAGGTGATTGAATATAACGTGGCATAAGCACAATTCTTGAGAATACATCTTTTGTACCTT
GCTACGAAATGGCAAAACTCGAAGCTAAGTATATGGTAAAAATGGAACAGTGACATGTAGATTT
CCTGAAAATGAAGTGTTATATATGTTTATTTCTTACATAATAAGTGATTCATGCTAATGGATTT
TAGACAAAAAGGTCTCCCCGCTTTATTTTATGAAAAAACAAAGCCAATATTATCCATGTGATTT
AGTGGGTTCGAATGTGTGCCTGCCAAACTGATCACATTCCAATACGAGTTACTATCTGAGTTTA
TAAGTTCATTCTCGGATTGTGACTGCTTATGCGTTCACACATCTACCCAGGGTCGGTACAGCTT
GCCGGTTGTTGACTAGTCTGGCCAGCTTGTATGCACTTGCCTCATCTCCGCCATAGCTGGTACC
CAACCAACTCTGATTGGTGTCTTCAGTATCTCCTCTGACCTCAACACTTCCTCCATGCCTGGGA
CATCTTTCTGTTTGTATAACACTCGCCATCCTCTCAATATCTTCCCTGCAGCTCGCATCACCAC
CTTCAACATCTCGCCAGTGCTCTCCCTAAAAACAAACGGAATTTCGTGTTTTCCATAAGCTCCC
TAAAATGGCAGAATTACAAGTGTTATTCACTGCGTTCTTATTATCAGAAATCCACCATCTAGCA
ACTGATTCAAAATCAGTACCGATCTGTACTTGTAAAATACGAGACATTAAATGCCAGTGCTCTT
CTTTTATTGCTTGTTTCCATGTCAACTTCAGCTTTTCCCTGCCTATCTTCCCATTGCTATCCCA
CCTTAGGATCTCACTACACACTGGTGCCTCTGAAGGTTTTTGTTGGATATGTCCAAACCATCTG
AACCGGTGTTGGACATGCTTTTCTTCAATTGGTGCTACCTCTAGCCTATCACATATATCATCGT
TCTAGACTTGATCCTTTCTTGTATGACCACAAATCTAGCGCAACATATGCATTTTCATAACAAT
TATCTACTGAACATGTCATCTTTTTTAGGCCAATATTCTACACCTACACCATACAACATAGAAG
GTCTAATCACCGCCCTATAAAACTTGTATTTTAGCTTTTGTTGTACCCTCTATAGAATGCCAGA
TGCTTGATTTAGATAAATATGTTAGATGTGATGGTTTATGTCCTGACATTTCAGCCAGTCTCAT
GAGTCATGATTTGTTGTTATACACAGATTTTAAGCATTATAGCCTTCTTGAATGTCACCATGTG
TTCTTGTCATTGTATAGGTGTTGATGGCACAGAAAATTGCAAAGGAAAAGGGTTATTCTGATGT
CCTCTACTTGGACGCTGTTCACAAGAAGTACCTTGAAGAAGTTTCTTCATGCAATGTTTTTGTT
GTCAAGGTAAAACTGCTAACACCTTTTTTATTTGGCTTGAATATTGGTTTTAGCAGGTCCAGTG
ATTTTAAGTTCTGAAAGCTAGTAATCAACCAAGCTTGTTAACCTATTTAATTTAAATTCTTCTC
ATTTCGCCCTAATTCATGCCGGCAATGCTAGGTAAAATACATCTGTCTTGAAAGATAAGCCTGT
AATGAGGCTGGCCATTTATGACGAGTAAGTTGATAACTGCATTAGTCTCTCAACTAGGGGTGGT
AATGGGCTCTAAACTTTACACTATAAAATTTAAGGATAGGATCGGATTAGGATCGGGCTCTATT
TCTATTCATTTTTGAACTAAAAATAATTAAGGGCTCAAACAAATTGTGAAGAAATATTTGGATC
ACGATCCATTACCACTGCTACTCTCAATTCTCAAGTGTTCTCTTGCAGTGAAGTAGGATAAGAG
ATTTTTCATGTCAGGCCTTCTATATAGAGCTAAATCTGTGACTGAAAATTTTAACCTCTTACCA
TGCATAAATCTTTTGTGGTTAGTCACCTTATGGAAACCAGATGTCTGTAACACATTAATTTGTG
AGTTGGTCTACAGGTCAGGACTATTCTATACACAAAGATCAAAAGGTTCTTTGCCAGATTGTCG
CATAGCTGTTCAATAGGATATAGTGCCATCTGGTCTACCTCTACTGTCACCTAATAGGTTGAGC
CACACTTAGCAGCTTAGAGCCTTGCAGAACTATATTATCTACTGAAGGACGACCTCTGTTCATC
TGTTGAATTCTCTCGATTTTCCTGCTGACTTGCATTTGTATAGCATATAGAACATGCTTTGCCT
ACTTTTCCTTAAGGTCATTTACTTCAGCATATTAATGGGCTAGCTTACGCATGTTATCTGTTAG
ACGTGTTTATTCCATTTATCGTCTTCTGCACCAGGACAATGTTATTTCTACCCCAGCAATAAAA
GGAACAATATTACCTGGTATCACAAGGAAAAGTATAATTGACGTTGCTTTGAGTAAAGGCTTCC
AGGTAACTAGTCATTTCCAATGAACTGAGAAAATCATCTAGGAGGTTAGTTGCTTCTTATATAG
CTTCAATGCCTTTGCTTATATAAGTTAGCAGTGGTTTTGGGACAGGCAATAGTGAACCTAGGTC
CATCTATCCATGTTTCGCATGTGGGTTCTAGCCATGTTGGCTTAGCTCATTTTAGAGTTAGAGC
TAGCAACCATGGTTGGGTTCCTGGTTTGCACAGATGCCATTTCATATGGCAGGAGGCTGACTGG
TTGAGCCCCTAATATATCCATGTTTGTTAGTGCATCTCACTGTCCTTTCCCTTGACTGTGAATA
TTGACATGGGTTCTATATTACAAATTATATTGCTAAGAATATATTTGTTGTTTTACTTGTGTGG
GCTGTATATCATTAAGCGAATGAAATTGGACCTTGGTGGTGATGTTGACCCAGTTGAAGATGGC
AAGACAATGTTCTGAAATCATGACCAAAAGTCAATGCATAAGTTAAAATGTTTGTTGTAATATT
AATTAATGTTTGTTTCTATTGCAAGGTTGAGGAGCGGCTTGTTTCAGTGGATGAACTGCTTGAT
GCTGATGAGGTATTCTGCACAGGAACTGCTGTTGTGGTGTCTCCTGTTGGGAGCATTACATATC
AAGGGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.100488936
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b