Detail information of BGIOSGA016784_circ_igg.1


General Information
CircRNA Name BGIOSGA016784_circ_igg.1
ID in PlantcircBase osi_circ_014580
Alias Chr04:26805350_26806546(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24955994-24957190  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGACAGAAGAAGCAGCAACAGCAGCAGCTATGTGGAACAGTGGAGGCTAGGAACTCATTTGCT
TGTTTGAAGAGCGTATGAAGCACGTCGCATCACAAGggtgtgttccttgctgtatcatctaata
cgcgctatcagatcatcaatggtctggagcgagtagttgagacatcacctattgcgaaacgtgt
gccacctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGTGTTCCTTGCTGTATCATCTAATACGCGCTATCAGATCATCAATGGTCTGGAGCGAGTAG
TTGAGACATCACCTATTGCGAAACGTGTGCCACCTGTTGCAATGGCTTTCACTGTTGGTGTCCG
TTTTGCCAACAATATCTATGGTGGGATGCAGTTCGTTGATTGGGCACGATGGAGTGGTGTTCAA
TAATGGTGAGTACTCCTGTTTGAACTGTTTTTTTTTATCAAATATTATTTGAAATCTTGAGGTT
GCTTGCAAAAAAGGAAACTTACCTTTGTTCGGAGTAGTCATTTTGCGCATGTATGCAATGTAGA
CTATATCTGTATATCTGCTGATGTACAGGAATCTCTCTTTGTAAAAAGTAGCATTCCTTCATTT
GCAGTAGTAGATAATCTGAATTTAAGTCTTAGTGCCTCCATTTCTTCAAGATAGCCCTAGATCA
TCAGGGCTAGCATGAACTGACAAAATTTTATGTTAAATCCGTAGCTAGAAGAGTACAATTGTGT
GTGTGTGTGTGTGTGCGTATGTGGTTTTTTTTTTTTGTTGCATGGGAGAAGAGTACAATTGTTG
ATGCGTAAAGTCAGGTATGGCATGGGTATCTTGAGTGGTTGCACAAACTGTAGGCACGGTGTAG
CTGGCCAATCTGCAACTTTGGGCCTCAAGCATATGTCTTCTACTATGGATAATCTGGAACTATG
AAATGACGGTCAAATTCGAAATGAAAGCTAAAAACCTGAAAGCCTGTGGTCTGAAAATACTTGT
GGTTGCAACTTCTAGAGATTTTTCAATGTCATTTAAATACTTGGTAGATGATTAACATTTAAAT
TTAGTCAACAGCTGCTATATTTAAATATATATTCATACCTAGCTTATGTTTACCTTGGAAAATA
AGAGTAAGATCAACTCTGTGTACTAGTAGCTCAGTTGTTGACATTGCATGCTTTGGGGCTATGT
CTATTTGTCTTGCATCATTTCCAAGATTTTGGACTAGCTCTAATTATTTAATTTTGCAGCTTAT
GAAACAGCATTTTATTTTTGCCTCAAGCATGAAAAATGGGCGAAGCTTTTGCTTTCTGTTCTTT
ACATTCTTTGGGACAGAAGAAGCAGCAACAGCAGCAGCTATGTGGAACAGTGGAGGCTAGGAAC
TCATTTGCTTGTTTGAAGAGCGTATGAAGCACGTCGCATCACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021