Detail information of BGIOSGA032204_circ_g.2


General Information
CircRNA Name BGIOSGA032204_circ_g.2
ID in PlantcircBase osi_circ_008836
Alias Chr10:7006776_7008179(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5375199-5376602  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032204
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA032204-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGATCGTGGAACATAAAACAGCTGGTACTTGCCTTCTTCCTCAACCCACTGGTCCCGGTCTT
CTGCCCCTCAACGGGCTTGGTCGGAATCGACTTGATccttgataccccaatcattatctggccc
acctggattatggcttgcactcatgatgaagccaccattggcctaacagaattgaaaactgcaa
tgaattag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGATACCCCAATCATTATCTGGCCCACCTGGATTATGGCTTGCACTCATGATGAAGCCACC
ATTGGCCTAACAGAATTGAAAACTGCAATGAATTAGAAAATTAAAAAAGATAGTGAAGCACACA
ATGAATGAAAAAAGGTGTAAAACATACTTGTCTTTTACGAATTACTGCAGATACAGCAGGCGTT
GACAGCAGACCGTTCCTACAAATATTTTAACAATTACAGGATACAAAGTATATATCAAACACAA
GATGAAATGGGAAATAAACTGGAAAATTGAGCATGCTAAATGTTTGAGGGAAGTAACATAGTGT
CCTTTCTATGCTCAGAACTAAGTCAAAATCAAATTATGTGATTATTATTGTCAGATGCTTTAAT
TTATTCGGTAAAATCTGTTATTCTTCCTTTAATTGAGTATGCTAAGGATCATGTGGATATTTTC
CAGACCGAACCCAGTGAAGGTATGAAGGCTTCAAGCTTTCAAAGTCAGGGTTCAGAAATCCGTT
CAGAGGTGGGGAAATGAGAACCTGACTAGTTATAGTTTTTTGCCCAGAAACTGGCCCTTTTCCA
GCCTTAAAAGTACTTGGTTTGGGAACATTTTATTAGAAAATCCTCAAATTGAACCCTTGAATAT
AATTAGGTGCAATTATAAGCATTTTGGTATATAGGATAACATCGCAAGTGGAGGATAGAAGTGT
GTATTAGCTGTAGTTTAACCAGGTAGTTTCAGGAGCCCTGATGGTATCCATTGGAATTTTAGTT
CTATGAATATCCATACTTCTAATAGTTAGTGTTGTATCTTCTAAATCCAAGAAGCTTCATCTAG
TATCTCCTTACCTGCCAACTAGGATCTTCCCAACACCATTCCCAGCTGCAATTTTAGTGATAAT
CTACATTCCCACAGAAATAGTCATAAATATGCATGCGTAAATGTGGAGCAAACACGTATTGATT
TACTCTTGGTTCCTAGCAGCACCTGAGCAGCATCCTTGTTAAAGTATCGGCCATCACCACCAAG
CACAAGGGTTCCACCAACATAATCCTCCGGGGGCAATGAATTGAACAGAGCCTTCAAACCACAG
AAAGGATAAATGAATGTAGCTCCATCTTAGAGGTGCCATCACATTAAAACAGAAAAGGCTATTG
ACGTGCAACATCAAGTAAAATGTGGCACACCTGAATCCAATTAGCGAGGTAATTCTCCTGCTGG
AACACTTTCACCTGAAAAGAACACCAAAAAAAGATGTATGAAGGGAATTGTACACACCCAAAAA
AAAAAAGCGTATCGGAAATGGGTGCAAGATCGTGGAACATAAAACAGCTGGTACTTGCCTTCTT
CCTCAACCCACTGGTCCCGGTCTTCTGCCCCTCAACGGGCTTGGTCGGAATCGACTTGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021