Detail information of BGIOSGA010243_circ_g.1


General Information
CircRNA Name BGIOSGA010243_circ_g.1
ID in PlantcircBase osi_circ_013290
Alias Chr03:26160044_26164564(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 27039741-27044260  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA010243
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010243_circ_g.2 BGIOSGA010243_circ_g.3 BGIOSGA010243_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA010243-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAATGAGGTTAAAGAAATTTGGAAGATCTGTAGAAGAAACTGGTCCTTGAACGAACAAGC
AATTTTTCTGTGAAGTGTCAAAGGCATCGCGTTTGCcctgtgcgtgcacccctgtgtcagtaac
gtttatcaactgtaacacacgggctgcaagttctgcgtcaattaactcctgtgattcttggctg
cataacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGCGTGCACCCCTGTGTCAGTAACGTTTATCAACTGTAACACACGGGCTGCAAGTTCTGC
GTCAATTAACTCCTGTGATTCTTGGCTGCATAACAAAATGAACATTGTAAGTGAAAAGAAAAGG
AAATCAAACAGAATATAAGGAAGGAAGCAAGGAATGTTAATTTCTCACCTACAACCAATGGTCT
GCCTAATCTTGAGAATGGCTGCAATTATGTGGACTAGCCATGTGAGCTGTCCTTCAATGACAGA
GAGCTCATTCGCATCTCCAGGAGCTGGTAATCTTGACCTTTCCTGTAAAAGTATTTGACTTTGA
AAAGGCATTCTTTATGCCCCAAAAAGAGGCCTGTGAAATAACACTAACATACCATATAAGCTTG
TAGAAGAGGCTCCATAATATTTATGATGTAAATGCTACTGTTTTGGTACTGCAAATCAGCAAAA
GAAAATCATAATATGGGCATGTCATAAAATGCAATTCTCTCTCAAAAAAAAAAGAGACTAAGAA
CNATAAGGGCATTTCATCTAGATTCTTCATACTATTGGTAACAGGCAAGGAGGTTAGTAGTGAC
TCAAAATAATTATATAAGAATAAGAATTCCATCCAGACAAAAAGTAACAGATATATATAATGAA
GTGGCATATAAATTAGCTGAAAACAGAAGAAACGATAATAAGAGATCTTCATCTGAAATTTGTC
GTATTTTTTTTATCTTATTTACTATATTTTCTGCACCCGTCCACAATATGAAAGCACTTAAGTT
GGCCAAAAATTTACTCTGGTTATTCTTGTTTTAAAATCATATAATTAAATACGATAAAAATGAA
TAGCATAATGCTACTTAAATTTGATGCATCTATTGTTGTTGTGTAATGATTCTATTAGTTCTTC
AATATTTAAAGAAAGAAATTCTGGTACCATATACAAGAAATTACTAAGTGCATGCAGTAAACTG
CAAGTAGATAAAACCAATGCATATGTTCAATAAAAAGATCAATTACATAAAACTATGAATCCTG
TTATGTGAAAAGCTGGAACAGGGTTAATCTCCATAAAAGAAAACATTCAATTGATTACGCGATG
TATCTTATCTACAGGTGGACATGATTACAAAGATGGATCCAATCAAAAGTTTAACAGAAAATTG
TCTCTTAAATTGGAAACCAGAACTTGACAGGAAATAGCGACCTGGAATCTACAAAGGTAAGGAA
GAGACTCCAACTGCTCCTGAAGAACATCCACATTATCCAAAGTATCATCAGATGAGTCGTTTGC
AAAGCTGGCCTGAGATGGATAGAAACAACAGGATATAACAAACGTTACCGCTTCAACTGAGATA
GAAAGCAGTTCCATCATCTCATTAGAAATCAGTACCTGAACAGAATTAATTCTAGAGGTGATAA
AACCCTCCGTGATTTCGGAACGGTCTCATCAAGCATACTTGGTGTGTCGCCTTTCAAGTAAGGA
ACAGATGTCACCAGCCTTGACCAAAGACTCAAAAGATAGTAGACACTATTGCTGGCCCACTGCA
AATATTCGATAGTTAAAACTATTGGAAATTGATTATTGAATAATCCAGTGCTAAGAGAATGAGT
CAAAAAAAAAAAAGGGAAACAGACCTGCCATGACAACAGGGATTTAGTTGTGAATTCTGCTACT
AAACCAATCCATTCACCATAAAACTCAATACTCAGAAGCTCTGACAACTGCGAAGTACAACAAT
GCAAGAGCCCACTCTTAATCACAAAGAGGTCCATTCATAGCTTGATATTACTATGACAATAACA
GAGAACTTGATAAAGGATCAAAAACCAGTGCAGCCAACATTATCTAGTAACACTGATAACAATC
AACCAACCAAATCATTTGGTAGTCAATGCCGGGAGTATTCCGAATGACACAATGAAGATATGCC
AACAGCAAACAAACATAATACAGTTCAATTTTGTTTTCATGATCAACATAGACTAATTTACATA
ACTACATTACTATCAAAGTTCTAGATAAGAAGGAATGGTCATTCATGGCAAATTATGAATGTGG
TAAGAAAATATTGAACCATGCTTTTTGTTCCAGAACATATACGATAGATACAACTTAACAAACA
GTAAGTTAGTAATAGGCAATTGGGACAATGAATGCATATAGAAAATTGGTAAAAGAAACTTTGG
AACAATAGCCATCTTCACTTGACAACACTATGACACAGGTATTAAATGCTTTCTAAACAGAGAA
CAACTCCATTGTTTATTGAAACTTTGAAAGCTAATAAATTGGTACCAAATGTCTGTAAGGCAAA
AAAAAAGTCAACAAAAATAGCACTTGCAAGTTGCAAACAATACCAAAAATACATATAAACATCG
TATACACAACAGTTCATTACGTAGAATTATAAATATAATACAAATTAACTATTCCATCAACTGT
TCACTACAACATGCACTGCATCACTACGATATGCTCTACATCAAAACCAATGCACTCTAAAAAT
GCAATCCACTATTTAGAACCTTGACTTGCATATCAGTATGACTAGTTAGTGCTCCCAGTAAAGC
CAAAAGACTAGAACCTACAAACAATTGGAATTACTTATTACTGTTCCTTCAAAGCAATAGTACA
AAACCACAAATCAGGGTAAAATAACATCAGTAAGGCATGTTTGGAATCCCACAAAATCCCCGCC
ATCCCAGTTCATTTCAGCCAGGATACCAACCAGAATTGGGCCACCCAACCAAGGCCTAAAAGAA
CTCAATGCGCACTTCATAATTAATGCATCATTACTGTTGCCAACTAATTCATCGGTTGTTACGT
AGCAAAAACTAGCAAGTCATTAATTCTGTAAAAGAATGCAAAGGGAAAGAACAAAGAGCAAATC
CTTGACACAAAACAAACAAGTTAGCTTCATCCTTCATTTTAAGTAACAGGATTCCAACCTGGAA
ATTCACTTTGAAACGTCCAAGAAGGCGGCAGAACTCATGGTAATTTCCATGATCAGCAAGACCT
GTAGATGAGCAGATCACACATCAGAAGAATAAATTACGTAAAGATATGGAGCATTTATTTTTGT
TCCTGCATGGAGCGAATTTGAGACAAGTATCTAATTTTAAAGATTACTAATAAATAAAGGTGTG
CTTTTACTTATAAAAAGCAAGTCTGGTTTCTACAGTGCACCACATAGCGTGACCAGGCATGAGT
CAATCAACTCGTGTTTAGAGTAAATGCCTCTTAACCTTACATAAAAGAGGCTTTTCACTCTATG
TAAGAGGATTGCAATTGAAATCGCTGGTCCTAATTACTGAAATTTGTAACAGGACTAAAATAAA
ACAGAACTTGGCAACAAAAGGACAAAGCGATAACCTTGGCCAGTTTGGAGTATCTCCTTTGTGC
CTGACATCAGATGAGAAAGAAACTGGGTCCTTGAAGGGTCCTCAACGAAAATACTGCGCCTGAC
AGAAGCAAGTCTCACAAGACATTCCAAAGCCTGCAGAAATGAAGGGCTAGGACACATAAAGAAG
TGCATAGGAGAGGGGCGCGGGGAAGAGTCAAGAAAAGAGCTAATCCACTGAACATGGCACATTA
CTTACAAAGAAAGAAAAGCGTAACAGCTGTTTGTAAGATAAATTCACAAGGAAAATATTGCTTC
TTAGAGATTCTTGAAAGGAATAAAGCATGCCTCTTAGAGATCCATACATTAGGAAAATATTGCT
GCTTCACAGAGGTGAGGAAGTCATACTTTTAAAAGAAAACATTGGGAAAATATTGCTGCTGAAT
GGAAGTCAATTTTGTAAAACTGTAGTGGTAGCTAACTAGAAATAAGTTTGAAAAATGTATTAAT
GAAAAATCATGCAATCAAAGTGTACATTCTAAACATGAGGAACTAGAAGCAAAATATATCTCTT
TTGTGTTAATGGAGTAATGGACAAAGCACTTGGTAAAATAATCAGAGATTATATTGTCGATATT
ATTCAAATCACCCAATCAAAGTATACCTCTTTTGAAACACATGTATCATTGACTTTATAGTAAT
CGAAGAAGATCTGAACAGTAGAAGGATCTTGAAGGAGAGGCCTCCAAGATGCAGGAAGCTGCAT
CAATAAAAAAATACATAAATTATAAGAAATAGACCAACTGGGATAGGTCAAATGTTTTACAGAG
AAGATAACAATTGTGCAAACTAACATACCTGCACTGTACCAAATTCCTCAGAGCTTTCATCCAC
AGGACAACCAACAAAGTCATATGACAAGCACCTTAATGCAAGCGAGAGAGGATCACGCCTAAAG
TCATCAGGTACTGCAGTTTAATTACAGATCGTATCAGAAGATGGAAGTGAGAAAGTGTGGACAT
TCCAATACACACTACTTTTAACAAAATGGATGAGACTGGTCCTTGAACTTTACCTTCACTCTTC
AGTTGGTGTAATGAGGTTAAAGAAATTTGGAAGATCTGTAGAAGAAACTGGTCCTTGAACGAAC
AAGCAATTTTTCTGTGAAGTGTCAAAGGCATCGCGTTTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021