Detail information of Solyc01g057780.2_circ_g.1


General Information
CircRNA Name Solyc01g057780.2_circ_g.1
ID in PlantcircBase sly_circ_000134
Alias NA
Organism Solanum lycopersicum
Position chr1: 63863077-63867749  JBrowse»
Reference genome SL2.50.38
Type   ue-circRNA
Identification method CIRI; find_circ
Parent gene Solyc01g057780.2
Parent gene annotation Zinc finger protein VAR3, chloroplastic
Parent gene strand -
Alternative splicing Solyc01g057780.2_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Solyc01g057780.2.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGAATGCCCTCATTCTTCTTGCCGTTTCCAGAGCACCTTTGAACAAAAATGGTGTCCCATTT
GATACAACAGCCTCAATATCCCTCCTTGAAAGCAACcccaactaccaatagagcccttagcatc
aatgctctataaaaaatctggtttgcaaaaccttgggcactgtatctgtgtaggttcatttatc
attgttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAACTACCAATAGAGCCCTTAGCATCAATGCTCTATAAAAAATCTGGTTTGCAAAACCTTGG
GCACTGTATCTGTGTAGGTTCATTTATCATTGTTGTCCCTTTCTCTTTTCATAGGATCAGAAGT
CACAACGGGAAGATTTCTCCGGTACTGAGTAGATGTCAACCTTCTCTCAAGAGGAGTTTTCCGC
TTACTCACCACAAATCTGTTAACTCCCTTGCGCATTGGCATAATAGATGGGAAGTCTTCATCTG
GGATCTGACTCAATTCAGATATGTCTTTTATCTGAGCAACACGCTGGAACCACCTCTCAGCTTT
GGCTTCTTCAGACATGTCTAACAGATCTGTTTCCTTCACAGCAGACCCCTCCAAACTCTTTCCT
GTCCATCCATTTCTGACGTTCTGGTTTCTAGGCAGCTTGGTTGAACCTACTCCCAAAGTCTCGG
CTAAGGATACATCCTCGTTCACGGAGTTTCTTCTGTCTTTACTATTAGTTCTGCAAGCATCTAA
AGCAAGAGAGGTTTCAACTGAATTTCCAACACAAGGGACCCCCTGATCCCCAGAGAAACTTGGA
CTTGCAAACCTTGAATTCGTGAATTGATCAACAGGAGTCTGTGCAGTAATAGTATCTCTGAACA
AAAACCCAGCATCATCCGACTCATGATGTGTCTTCTCTGCATCTTCCTTCTCACTATAGGTTTT
GGAAAGAGGATTCATGGGTGATCCCTTGTGATCTGAGTTGCTGAATGTAGATGAAGTTCCAACC
CTAGACAGAGAGGATGAACCTGTGATATCTTCCTGTTGTGTGTCCCTTTTCGCAAAGTAGCCTG
GAGGGAAGGGAACAAATGGGACAAAGCTACTGTTGTTTGCTTGCTCCATGGCCACTTGTCTTTT
GTACATTGGAGAAGTCAAAGACCGGTCTTTCTTCTTGCTAACTACATATCTATTTTCTCCTTTA
CGCATTGGCATAATCTCTGGGAAGTCATCATCGGAGATGGAACTCGATAAGTCTTTGACATCAT
GCAGCTCCGCGATTTTCTTGAACCAACTTTCTGACTTCTCAGCTTGTTCTCTCTCTTTCTCCTC
ACTGAGTAGATCATTTGACTGGAACTTCTCCATGGACTTCCCAAAGTCATTGCCAAGACTTGCT
GAACATGTTTGGTGACTGACCTCAGGAGTGTGAGAGACACCAACTTCTTCCTTTACTTTCTCAT
CCATCACTGAAGTTGGATTATTTTTCTGAAACATGTCTTTTGGTAATGGCACAAAAGGAACATA
GTTAGAACCTCTTCCACTATGTTGAATGACCGACTCGCTATTTTTGTCTGCAGCAACGCCCTTA
TGACTTGTTCCAGAATTTTGATCCATATTCTGCTTCATTGACGTGGCAAGGACACTATGTGCAC
CACCAGTCAAAGTGTTGCCTTCTGGGATACCATTGTAACCAAAGTTTCTTTCGTACTGAGTGTT
GGCCAACCTCCTTTCCAAGGGTGTTTTCCTTGTGCTAACAACAAACTTATTTTCTCCTTTCCTC
GGTGGCATTATTTCAGGGAAGTCTTCGTCAGCTGCTGCACTATCCATATCAGAGGCATTCTTCA
TCTGAGAAATCTTAGAAAACCACCGCTGTGCCTTCTCCTCATTCTCAGCCAACTTAAGATCCAT
TCCATTTGAATACGCAGAGTTCCCATTATACCCATCCTCCGCACTGGAGTGGGTAGTTCTAGGT
GAAGCCCCAGCTGGTCGTCCGAAGTCGCATCTCAGACAGACAACATTTCTCCCATAGTTGAAGA
AATAACATCTGCGATATCAACATTATAATAAAAAACATGTCCTACATGATAATGATTTGAATAG
AGCTAATGACTGAAATACATAAACAAGAGACTTATTAGTGCTTACTGAGGGCATTCCCACTCCC
CGCCTGTCAGCTGTCTCCTTGGTCTAGGTTCCTCACATTCAAGGCATTTGTTGTTTCTTGCAAA
GTTCATGAAATTGCACCTGTTCAATATCATGCAGACTTAGACCGTTAAAGATCATCAAAGTACA
AGAACCAACAAATTAACAAGCTTTAGAATAAGGGAAGGAGGACAGAAATAACTTTACTTTGGGT
TCAGCACATTCCCTTATTTGGTAGAGCTAGAGCTAGAAGTATATGAAAGAAATAGCTTGAAAGA
CAACAAAAGTGTGATAGAGTGGGTAACAAGTCCCACGTTAGTTGGGGAATGGACTAGTGGTCTC
ATTATATGGACTTTGGCAATCCTCTCCTCATGAGCTAGCTTTTGGGATTGAGTTACGCTCAGGT
ATCATATCTTGTGTCATATCTTTACATTGTATCAGAGCCAGGTCCATCCCCATTTGGGCTCTCA
ACCCATGCTCCAATTGGGCCTGGGCGTGAAGGGAGAGTTAGAATGGGTAGAAGTCCCACATTGG
CTGGGTAAAAAGTCCCACATTCTGTAACATGTCTTTTGAAACAGTGGAAAATAGACCCGCCCTT
CTAACCCTTCTCCACTAAAATATCGGGCTTCGTTTTGCATGGTATGGGGCTTGAACCTGCGACC
ACAAACCTTCCACCTTTTGCCACTCGAGCTAGGCCTTGGGGGCTTGGTCCAAAGGGCGGGTCAC
AGACGGATTTCTTGCTTATCAAAAAAACAGGGATTTCTCTCATCTCCTCAAGATATATCTTTAA
CGTATGAATGTTAATAGGAGAGTTAAATGTTTCTCATGTCCTAATGGAATTCACCAAAGAAAAT
AAAGGGTCACTAACAGTGGAATTGCCCTTGTTTCCTAAAAAGAATATGGGGCCACAAAGCTGAA
AATAGTAACAGACTAAAAACCAATAAAATTTTAGAAACAAGAAAGGCCAGAACAAGACAATTGT
ACATACTTTTGACATATCCAGTCGCCTCTCTTCATTACAATATTTTGTCTAATAGGCCTTGGTG
TTTGTCCATATCTACCTGAAAAATCATATTGCTCTGCAGGAGGCAGGTTGACTGCTGGAGCTCC
GCAGCTCACTTCAACCAACTCACGCAAAAGACTCCGGCAAGATGATTCTATAAGGTCCCTGCTA
TAGAGGGAGTTTTTTTCTGAAGAAACAGAGGGTTTACTCGCGTAACATAATATGTATTTCATGA
GATCAACCGTGTTAGCGTTGCCATGATCCAGCACCTGATATTTCAATCAAGATAAAATTTCAAA
AACAAACTAAAAGTAAGAGGAAAAAACAATGTTCAGCAACCCTATATCAGATGTGTACTTGAAA
GTAAAGCTATTTCAGTAACTCAACAAAAAAATGTAAAGAGAAAAATTGTTGATGCAAGCTCAGT
ATAGTATTTCCTTCAGTTTTCTCCAAGGGGTCAAGGAATAGTCAAGAGGTGTAAGAAGCAAATT
ACAAGACATAGGATAGCTTAGAGATTACTTTGGCCAGATGTATTACTTCCTAGAGGATTAATTC
AAAGGAAAAAAAACAAAGTCAATAAACAAAGCAGTTACATCATAAGACACCTATTTTTAAGTCT
AAGTAGTACCTAAAGCTCTTCAATTTTAAAAACAAAGACAACTTGGAAGTCATACCTAGGCGTT
CACTTCCATCTTAAAGAAGGAAACCAATCGGCAATGAAATATCACACAAACCCTTCGACAGATT
ACAACTTTTTTTTAGATATCACAGAGCATTAGAGTTTATAGTGTAAACAGAGGATTAGAGTTTA
TAGTGAAAACAGAGGATTTTCTGCAATCATTCTTGCAGGGGATTCATAGGCACCTGGACCGGAT
GGATTCACCATGGAATTTTTCACCAGTTGCTGGGAGATAGTTAGCAAAGAAGTAGTGGCAGCAG
TTCAAAACTTTTGTAATCAGACAATTTTTTGAAAGGAGTTCAATGCCACCTTCATAACCTTGAT
CCCAAAAGAATTGGGGGCCAATAGGTAGCATATTAGCTTAATAGGTAGCACATACAAGATCAAC
TCAAAATTGTTGACTCAAAGGCTGAAAAAGGTCTTCTCAAAACTGGTAGATGCACATTAGATGG
TATTTATTGAAACTGGTACATGCACATCAGATGGCATTTTTTAAGGGCACGCAGATCATGGATG
CTATTATGATTGCAGTAAACAGGATTGTAAGGCACCAAATGAAGCATTCCCTAGCCTCAACCAA
AGTAAAAATTGGGCATCAACTTAAGTTCTACCAACACTCACAAATAGAATTACCTTACTCTATC
TTAATAAGCTCAAGTATCAAAAATGTCTCATCAAGTTAAGTAGTTTAGCTTTGAGCTTAGTTGA
GGTCATCAAAAGGAAGCTCAACCCTGAATCGATCCAACTTTGCTTAGTTTGTAATCAAAACGTA
AAATTATTTTAAATAGATATAATGTCCACAAATGTAACTGAACCCTTAAGCTTATTTCCAAATT
GATTGGACTAAGTAAGTCTTATAGTAATCCTTCTTCTAATATGTACAAATCCTTCAAATTAAAT
AATTTGATGAAGGAACCATTGTAACGACAACAGAATACTATATTATACTGTAAAATAAGAATAG
ATTGTGCTTACAGTGCTCCCGTCAATACCCAAGAATGCCCTCATTCTTCTTGCCGTTTCCAGAG
CACCTTTGAACAAAAATGGTGTCCCATTTGATACAACAGCCTCAATATCCCTCCTTGAAAGCAA
C
Conservation Information
Conserved circRNAs NA
PMCS 0.137063954
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020