Detail information of Zm00001d026063_circ_g.1


General Information
CircRNA Name Zm00001d026063_circ_g.1
ID in PlantcircBase zma_circ_006297
Alias ear_test_circ_001575
Organism Zea mays
Position chr10: 137335325-137335469  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d026063
Parent gene annotation Putative leucine-rich repeat receptor-like protein kinase family
protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues ear
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d026063_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGAGAAGGGTGAGTGATGAGCAGTTGGAGATCTCTGGTGGTATCTTGCCTGAAAGCTGATTG
TAGCTGAGggtcaagcgtctgtagcttcgagaggctggcaacagaggctggtatgtctccgcca
aaatgattgtcgtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCAAGCGTCTGTAGCTTCGAGAGGCTGGCAACAGAGGCTGGTATGTCTCCGCCAAAATGATT
GTCGTCAAGCTTGAGAAGGGTGAGTGATGAGCAGTTGGAGATCTCTGGTGGTATCTTGCCTGAA
AGCTGATTGTAGCTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.471262011
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018