Detail information of BGIOSGA032641_circ_g.1


General Information
CircRNA Name BGIOSGA032641_circ_g.1
ID in PlantcircBase osi_circ_008835
Alias Chr10:6894355_6895287(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5349034-5349966  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA032641
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032641-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGGGTGTTGCTGGGCTACTTCTCTTTGCTGGATCTGTCAGCGCCTTGGCATACTTGGGCCCA
AAAGAGTCCATTGCAGAAGTTATATCTGATCTAAAGggtgggcctgtcgtatatgtgatatgag
ctcaggacgtttaaggccatgtgacttcaagtatactaaactattagcttctcttcaaactttc
agatgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGGCCTGTCGTATATGTGATATGAGCTCAGGACGTTTAAGGCCATGTGACTTCAAGTATAC
TAAACTATTAGCTTCTCTTCAAACTTTCAGATGCACATATAATTTTGAGATAAGGTACTGCTTT
TCGAATTCTGACACATCCTTAGATCCAACAATTCTTGTCTACTTTATGTCACAAAGCTAGAAAA
ACACCATTCGATGAAGTGTTCTGGACTATCAAACATTAAAGATACATAAAAAATCAACTATGCA
TATCAGTTTTAATGTGTTACATGCACTTTAGTTAATCCATGCATTTGGCAATAGTACATTTCCC
TGTACTGCAATGAGATCCCTTCTGTCGCATTCTGACTGATGATAATTTGCATTGCATACTGCCA
TAGACTGCCAGTTGTTCAAGCTGAGCCTTTTAAGAAGGTTATTTCGAAGGCAATCAGTCATCTC
ACGAAGCAAGTGCAGAATGCCAAAGCTTTGATTGATGGAGTCCTGGTATTTACACAGCTTCTTA
GCCCTTATTCAGCTGGAGAAGTGAAAAAAAATACTACGAGTCAGAATAATTTGCATTGTCTCTT
AGAATTTTGGAGTCCTCTAGTTTTGTTTGTGTTTGACATCCTCTCATAGTTATAATGTATTTTC
AACTAGTTTTTGGATGACATGGACAACACTTTGGAGGGGCCACATAACGTTGAATTTCTTGTGC
CTTTCAAGAACAATTTGCCGGCTGAAGGTGCCCTAGCTAATGCTATTTCCTATTATATGTGATG
ATCAGTTTCTCTCTATGTCATTATGGGAGCCTTATGGTAAATGCTTGCACTAAAGAATGCAGTT
TAGAGGGTGTTGCTGGGCTACTTCTCTTTGCTGGATCTGTCAGCGCCTTGGCATACTTGGGCCC
AAAAGAGTCCATTGCAGAAGTTATATCTGATCTAAAG
Conservation Information
Conserved circRNAs zma_circ_001798
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021