Plant Circular RNA Database

Detail information of AT5G08470_circ_g.12

			
						 General Information
					
						CircRNA Name
						AT5G08470_circ_g.12
					
						ID in PlantcircBase
						ath_circ_037065
					
						Alias
						5:2740388-2742737
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 2740388-2742737  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G08470						
					
						Parent gene annotation
						
							Peroxisome biogenesis protein 1
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G08300_circ_g.1 AT5G08300_circ_g.2 AT5G08300_circ_g.3 5_circ_ag.4 AT5G08370_circ_g.1 AT5G08370_circ_g.2 AT5G08370_circ_g.3 AT5G08370_circ_g.4 AT5G08370_circ_g.5 AT5G08380_circ_g.1 AT5G08380_circ_g.2 AT5G08380_circ_g.3 AT5G08380_circ_g.4 AT5G08390_circ_g.1 AT5G08390_circ_g.2 AT5G08390_circ_g.3 AT5G08390_circ_g.4 AT5G08390_circ_g.5 AT5G08390_circ_g.6 AT5G08390_circ_g.7 AT5G08390_circ_g.8 AT5G08390_circ_g.9 5_circ_ag.10 AT5G08410_circ_g.1 AT5G08410_circ_g.2 AT5G08410_circ_g.3 AT5G08415_circ_g.1 AT5G08415_circ_g.2 AT5G08415_circ_g.3 AT5G08415_circ_g.4 AT5G08415_circ_g.5 AT5G08420_circ_g.1 AT5G08420_circ_g.2 AT5G08420_circ_g.3 AT5G08420_circ_g.4 AT5G08420_circ_g.5 AT5G08420_circ_g.6 AT5G08420_circ_g.7 AT5G08430_circ_g.1 AT5G08430_circ_g.2 AT5G08430_circ_g.3 AT5G08440_circ_g.1 AT5G08440_circ_g.2 AT5G08440_circ_g.3 AT5G08440_circ_g.4 AT5G08440_circ_g.5 AT5G08440_circ_g.6 AT5G08440_circ_g.7 AT5G08450_circ_g.1 AT5G08450_circ_g.2 AT5G08450_circ_g.3 AT5G08450_circ_g.4 AT5G08450_circ_g.5 AT5G08450_circ_g.6 AT5G08450_circ_g.7 AT5G08450_circ_g.8 AT5G08470_circ_g.1 AT5G08470_circ_g.2 AT5G08470_circ_g.3 AT5G08470_circ_g.4 AT5G08470_circ_g.5 AT5G08470_circ_g.6 AT5G08470_circ_g.7 AT5G08470_circ_g.8 AT5G08470_circ_g.9 AT5G08470_circ_g.10 AT5G08470_circ_g.11 AT5G08470_circ_g.13 AT5G08470_circ_g.14 AT5G08500_circ_g.1 AT5G08500_circ_g.2 AT5G08500_circ_g.3 AT5G08500_circ_g.4 AT5G08500_circ_g.5 AT5G08530_circ_g.1 AT5G08530_circ_g.2 AT5G08530_circ_g.3 AT5G08530_circ_g.4 AT5G08530_circ_g.5 AT5G08530_circ_g.6 AT5G08535_circ_g.1 AT5G08535_circ_g.2 						
					
						Support reads
						2/1
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G08470.2:6
AT5G08470.3:7
AT5G08470.4:2
AT5G08470.1:7

General Information
CircRNA Name	AT5G08470_circ_g.12
ID in PlantcircBase	ath_circ_037065
Alias	5:2740388-2742737
Organism	Arabidpsis thaliana
Position	chr5: 2740388-2742737 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G08470
Parent gene annotation	Peroxisome biogenesis protein 1
Parent gene strand	+
Alternative splicing	AT5G08300_circ_g.1 AT5G08300_circ_g.2 AT5G08300_circ_g.3 5_circ_ag.4 AT5G08370_circ_g.1 AT5G08370_circ_g.2 AT5G08370_circ_g.3 AT5G08370_circ_g.4 AT5G08370_circ_g.5 AT5G08380_circ_g.1 AT5G08380_circ_g.2 AT5G08380_circ_g.3 AT5G08380_circ_g.4 AT5G08390_circ_g.1 AT5G08390_circ_g.2 AT5G08390_circ_g.3 AT5G08390_circ_g.4 AT5G08390_circ_g.5 AT5G08390_circ_g.6 AT5G08390_circ_g.7 AT5G08390_circ_g.8 AT5G08390_circ_g.9 5_circ_ag.10 AT5G08410_circ_g.1 AT5G08410_circ_g.2 AT5G08410_circ_g.3 AT5G08415_circ_g.1 AT5G08415_circ_g.2 AT5G08415_circ_g.3 AT5G08415_circ_g.4 AT5G08415_circ_g.5 AT5G08420_circ_g.1 AT5G08420_circ_g.2 AT5G08420_circ_g.3 AT5G08420_circ_g.4 AT5G08420_circ_g.5 AT5G08420_circ_g.6 AT5G08420_circ_g.7 AT5G08430_circ_g.1 AT5G08430_circ_g.2 AT5G08430_circ_g.3 AT5G08440_circ_g.1 AT5G08440_circ_g.2 AT5G08440_circ_g.3 AT5G08440_circ_g.4 AT5G08440_circ_g.5 AT5G08440_circ_g.6 AT5G08440_circ_g.7 AT5G08450_circ_g.1 AT5G08450_circ_g.2 AT5G08450_circ_g.3 AT5G08450_circ_g.4 AT5G08450_circ_g.5 AT5G08450_circ_g.6 AT5G08450_circ_g.7 AT5G08450_circ_g.8 AT5G08470_circ_g.1 AT5G08470_circ_g.2 AT5G08470_circ_g.3 AT5G08470_circ_g.4 AT5G08470_circ_g.5 AT5G08470_circ_g.6 AT5G08470_circ_g.7 AT5G08470_circ_g.8 AT5G08470_circ_g.9 AT5G08470_circ_g.10 AT5G08470_circ_g.11 AT5G08470_circ_g.13 AT5G08470_circ_g.14 AT5G08500_circ_g.1 AT5G08500_circ_g.2 AT5G08500_circ_g.3 AT5G08500_circ_g.4 AT5G08500_circ_g.5 AT5G08530_circ_g.1 AT5G08530_circ_g.2 AT5G08530_circ_g.3 AT5G08530_circ_g.4 AT5G08530_circ_g.5 AT5G08530_circ_g.6 AT5G08535_circ_g.1 AT5G08535_circ_g.2
Support reads	2/1
Tissues	seedling
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G08470.2:6 AT5G08470.3:7 AT5G08470.4:2 AT5G08470.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATACAAACCCAGTTGTTGATTACTAACAACATCAAAATCTTATTTTGCTTGTAGTCAAGAGAA
GCAAAGGGCAAAAGAGCAACCTTAGCATAATCAAAGgaaatattggttgatagagctgttcatg
ctgccattggccggcatctacctttagaatcaaatatatccaaatataatttggtcaaagaaga
ctttactc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAAATATTGGTTGATAGAGCTGTTCATGCTGCCATTGGCCGGCATCTACCTTTAGAATCAAATA
TATCCAAATATAATTTGGTCAAAGAAGACTTTACTCGAGCTATGCATGATTTTGTGCCTGTTGC
CATGCGTGACATCACAAAATCTGCCTCTGAAGGTGGTCGTTTGGGGTGGGAAGATGTGGGAGGT
GTGACTGATATTAAAAATGCTATCAAAGAGGTATATGACTATGCTTACTGCCATATCTGATTTT
GTTGCCCTCATTAAAATCTAAATTAGTGTGGGGTAGGAAATCTTGCCAATAAATGTTATCCTTT
TATAATTGCAACCAGGAAGCATCTGTTTCCTGCCTCTTTGTCTGTTGGCTTTTACTTACTGAAG
TTAGGTCGTGTTCAGTGGGAAACAATATTTCTGTAAGACCTGAGTTGATATAAGTTGAAATATC
TTGGAATGAATCTCACGGAAATAATTCCACTGGGCTATATAAGAGCTACTAGTTATGCTAACAA
CTACAGTTTGAACCAGTTCTTATTTAGAGATATAATTCTAGATATGCAACTTTATTGCTCTTTG
CCATGTCCAGATGATTGAGCTGCCATCAAAATTTCCAAAAATCTTTGCAAAATCTCCTCTGCGT
TTGAGATCGAATGTTCTCTTGTATGGCCCACCCGGTTGTGGGAAGACTCACATTGTTGGTGCAG
CTGCTGCAGCGTGTTCCCTACGGTTTATATCGGTGAAGGGGCCTGAGCTGTTAAACAAATACAT
TGGTGCATCTGAACAAGCGGTAAGAATGACAACCTTTCTTTGTTTTCCATCTTCAAGAACCTTT
GAGATGGTTATCAACCTATTCAGTTCTTTAGTGACGCATGCTATTATCTATACTGTTGAATTTA
TTTTGATTTTTCTGGGTTTCTTGCCTAGTCTTTACCTTGTATTAAACAATAGAATGATAAAGAA
ACCTCTGAAAATGTTTCTAGAGAAAAGTTTTCAGACAGCTTTGTTCCTTTTTAATTGTTATTCC
TGCTAGTCTCTTTACATAAAAATCTGAAAATGTTATCCTAATGGTTCCGCATATACAATAATGG
AAAACACACTTCTCTCAGGTCCGTGATATATTTTCGAAAGCAGCAGCTGCAGCTCCATGCATAC
TCTTTTTCGATGAATTCGATTCAATTGCTCCCAAAAGAGGACATGATAATACTGGTGTAACTGA
TCGAGTTGTTAATCAAGTAAGTTACTTCAAAGTCTGAGCAAATTCTATCCAAGTCAAAGTTCAA
ACATCTCATGTCATATTTTTCTTTTGCGTAGTTTTTGACAGAACTGGATGGAGTTGAAGTTCTA
ACAGGGGTCTTTGTATTTGCTGCAACCAGGTATTCACACCCGAATAAGTCTATCTTGCATATCA
TATTTTGTGTTCGATGTATCATATAATCAACTGCAAACGGTGGATTCTTCTGAGTTGATAGTTA
ATAATAAATCTTAAATATGATAATCTTGAAGCCTGTGCTCAGTCCTCAATTTATGTTTTTCATT
ACATACAAAAGAGGGATAATGACTTTATAATGGATACATGACTCAATTAACAGTAGACCAGATT
TACTTGATCCTGCCCTCCTAAGGCCTGGCCGGCTTGATCGTCTTCTTTTGTGCGACTTTCCTTC
CCCACCAGAACGATTAGAGATTCTTACAGTTCTTTCTAGAAAGGTTAGTACTCTCAGTTACATC
ATTTCTGCTAATCATTTTTGTCCTCAAGTCTCATGTAAAGTATGTATGCTACATATCTGAACGA
CCATTAACTAGAATCTTCTATGGCTAAGCGATTTCCATTGGATTCTGACATTCAATTGATGGTC
TCCCTAGACAATATGTAGATAAGATTTATCTATATATATTACAAGTAGTTAAGATGACAAAAAA
TCTTTCTGCATTTTTACAGCTTCTGATGGCTGATGATATTGACCTAGAGCCTATAGCTTTGATG
ACTGAAGGCTTCAGTGGAGCTGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTAC
ACGAGTATCTGAACAGAGAAGATAAACCCGAGACCGGAACTACACCAATAATAACTGATCCTCT
TCTGAAGTCGATTGCTTCTAAAACTAAACCATCGGTTTCCGAAACCGAGAAACAAAAGCTCTAT
GACATATATAGCCAGTTTCTGGATTCAAGAAAATCGGTATCTCTCTCATCTCCACTCTAATTCC
TCTTCCCTTTTATACAAACCCAGTTGTTGATTACTAACAACATCAAAATCTTATTTTGCTTGTA
GTCAAGAGAAGCAAAGGGCAAAAGAGCAACCTTAGCATAATCAAAG
						
					

			
		

Sequences
Splice junction sequence	TATACAAACCCAGTTGTTGATTACTAACAACATCAAAATCTTATTTTGCTTGTAGTCAAGAGAA GCAAAGGGCAAAAGAGCAACCTTAGCATAATCAAAGgaaatattggttgatagagctgttcatg ctgccattggccggcatctacctttagaatcaaatatatccaaatataatttggtcaaagaaga ctttactc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAAATATTGGTTGATAGAGCTGTTCATGCTGCCATTGGCCGGCATCTACCTTTAGAATCAAATA TATCCAAATATAATTTGGTCAAAGAAGACTTTACTCGAGCTATGCATGATTTTGTGCCTGTTGC CATGCGTGACATCACAAAATCTGCCTCTGAAGGTGGTCGTTTGGGGTGGGAAGATGTGGGAGGT GTGACTGATATTAAAAATGCTATCAAAGAGGTATATGACTATGCTTACTGCCATATCTGATTTT GTTGCCCTCATTAAAATCTAAATTAGTGTGGGGTAGGAAATCTTGCCAATAAATGTTATCCTTT TATAATTGCAACCAGGAAGCATCTGTTTCCTGCCTCTTTGTCTGTTGGCTTTTACTTACTGAAG TTAGGTCGTGTTCAGTGGGAAACAATATTTCTGTAAGACCTGAGTTGATATAAGTTGAAATATC TTGGAATGAATCTCACGGAAATAATTCCACTGGGCTATATAAGAGCTACTAGTTATGCTAACAA CTACAGTTTGAACCAGTTCTTATTTAGAGATATAATTCTAGATATGCAACTTTATTGCTCTTTG CCATGTCCAGATGATTGAGCTGCCATCAAAATTTCCAAAAATCTTTGCAAAATCTCCTCTGCGT TTGAGATCGAATGTTCTCTTGTATGGCCCACCCGGTTGTGGGAAGACTCACATTGTTGGTGCAG CTGCTGCAGCGTGTTCCCTACGGTTTATATCGGTGAAGGGGCCTGAGCTGTTAAACAAATACAT TGGTGCATCTGAACAAGCGGTAAGAATGACAACCTTTCTTTGTTTTCCATCTTCAAGAACCTTT GAGATGGTTATCAACCTATTCAGTTCTTTAGTGACGCATGCTATTATCTATACTGTTGAATTTA TTTTGATTTTTCTGGGTTTCTTGCCTAGTCTTTACCTTGTATTAAACAATAGAATGATAAAGAA ACCTCTGAAAATGTTTCTAGAGAAAAGTTTTCAGACAGCTTTGTTCCTTTTTAATTGTTATTCC TGCTAGTCTCTTTACATAAAAATCTGAAAATGTTATCCTAATGGTTCCGCATATACAATAATGG AAAACACACTTCTCTCAGGTCCGTGATATATTTTCGAAAGCAGCAGCTGCAGCTCCATGCATAC TCTTTTTCGATGAATTCGATTCAATTGCTCCCAAAAGAGGACATGATAATACTGGTGTAACTGA TCGAGTTGTTAATCAAGTAAGTTACTTCAAAGTCTGAGCAAATTCTATCCAAGTCAAAGTTCAA ACATCTCATGTCATATTTTTCTTTTGCGTAGTTTTTGACAGAACTGGATGGAGTTGAAGTTCTA ACAGGGGTCTTTGTATTTGCTGCAACCAGGTATTCACACCCGAATAAGTCTATCTTGCATATCA TATTTTGTGTTCGATGTATCATATAATCAACTGCAAACGGTGGATTCTTCTGAGTTGATAGTTA ATAATAAATCTTAAATATGATAATCTTGAAGCCTGTGCTCAGTCCTCAATTTATGTTTTTCATT ACATACAAAAGAGGGATAATGACTTTATAATGGATACATGACTCAATTAACAGTAGACCAGATT TACTTGATCCTGCCCTCCTAAGGCCTGGCCGGCTTGATCGTCTTCTTTTGTGCGACTTTCCTTC CCCACCAGAACGATTAGAGATTCTTACAGTTCTTTCTAGAAAGGTTAGTACTCTCAGTTACATC ATTTCTGCTAATCATTTTTGTCCTCAAGTCTCATGTAAAGTATGTATGCTACATATCTGAACGA CCATTAACTAGAATCTTCTATGGCTAAGCGATTTCCATTGGATTCTGACATTCAATTGATGGTC TCCCTAGACAATATGTAGATAAGATTTATCTATATATATTACAAGTAGTTAAGATGACAAAAAA TCTTTCTGCATTTTTACAGCTTCTGATGGCTGATGATATTGACCTAGAGCCTATAGCTTTGATG ACTGAAGGCTTCAGTGGAGCTGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTAC ACGAGTATCTGAACAGAGAAGATAAACCCGAGACCGGAACTACACCAATAATAACTGATCCTCT TCTGAAGTCGATTGCTTCTAAAACTAAACCATCGGTTTCCGAAACCGAGAAACAAAAGCTCTAT GACATATATAGCCAGTTTCTGGATTCAAGAAAATCGGTATCTCTCTCATCTCCACTCTAATTCC TCTTCCCTTTTATACAAACCCAGTTGTTGATTACTAACAACATCAAAATCTTATTTTGCTTGTA GTCAAGAGAAGCAAAGGGCAAAAGAGCAACCTTAGCATAATCAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.298498613

Conservation Information
Conserved circRNAs	NA
PMCS	0.298498613

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G08470_circ_g.12

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