Plant Circular RNA Database

Detail information of orai.008G053600_circ_g.2

			
						 General Information
					
						CircRNA Name
						orai.008G053600_circ_g.2
					
						ID in PlantcircBase
						gra_circ_000818
					
						Alias
						Chr08:7723111|7726099
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr08: 7723111-7726099  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.008G053600						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						3/2
					
						Tissues
						leaf/ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.008G053600.1:8
Gorai.008G053600.2:8

General Information
CircRNA Name	orai.008G053600_circ_g.2
ID in PlantcircBase	gra_circ_000818
Alias	Chr08:7723111\|7726099
Organism	Gossypium raimondii
Position	chrChr08: 7723111-7726099 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.008G053600
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	3/2
Tissues	leaf/ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.008G053600.1:8 Gorai.008G053600.2:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCAAAATAACACCACTCAACTTGCCTTAAAATTATTCTCAGAAAACATCTCAAGGGCTTGTTC
CCTTGTCACTTCAATGCGTTCAAAAGGTTGCTTTTCctgctgaaacctcctgacacgagttaac
ccagtcagtgccccactagcctcatttcgatgcaagaccccaaaatcagccatgcgaagaggta
gttctgca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCTGAAACCTCCTGACACGAGTTAACCCAGTCAGTGCCCCACTAGCCTCATTTCGATGCAAG
ACCCCAAAATCAGCCATGCGAAGAGGTAGTTCTGCATGAATGAGAATACAACAAAGCCAGATAG
GAACCTCTTTCAGAAAAACATAATTTAAATAAGCACATTGTAAGCTACAGAAGAAAAATAAATA
AACTACATTGACAAAATTATATATCTTGGTAAAGACTGGGCCATATAGCAATTACATTAGAGGC
TAAAAAAAGAATCAAAGGGCAAAAAGATGCAGAATGGAATACATGAAAATGTATTCAAGCTAAT
ATGGTTTCAGAAGATTTTATAATTAGAACAAACTCATTCACTAATATATAATGGTAACTCATTA
CCATGAAGTATGAAACAAAAGGGAGCAAAGAAATGTTTATCCAACATTTTAAAGCTTGTACATG
GAAAATTTTATAAAGCACAAACCAAGATTGGATGCTCATGTTCGGAGCAACAACATGATGAAAT
AAACAAAGGCGCATAGCCTAAGAATGCTTTTTTTAAGCTCTCCTCACAGGGCAATGAAGTTACA
ATGCGGTCTATGGTTGGCATGCACGCTTTCAGGTGATTTTGCTTGATCACATATAATTTAGAGA
GAGAAAGAAAGAATGCAAAGGGGAGCTTCTTCTCATGTGCAGTACCAAAGGTTTTCTTGCCATA
TGTAAAAAGTAGGCAAAGCATAGATGCATATGAACTGACCTCTATAAGAACGAACCCTGTGCTG
AAACATTAAACAGTGCCCTGGGCAATTCATAGGCTTCAGTCCAAACTCTTGTTTTTCAATCTGT
CGCAGAGCGAAACATCATAAAAAGGATCATCGATAGAAGACTAAATGCAGAAATGCACTTTTCA
ACAAATGTTTGTTAAATTCTAGGAAGTCCACATCAAAATTCACTCTACAATTAAAACAACAGAC
AAGTTCAATTTTTCCATAGTTGCACAAAATCTCACCTCAAACAAAAACATATTCTCCTTATAAT
TTGCAGCATGGCCAGATGTTTCCCAAAGATTCATATTATACATGTTGGGTGACTTAACCTGTCA
AATTATGCAACTTTTTTGATTCAGTATTCAAGTAACAGAGTTTTAATTAAATCTCTAAAATAGA
GCAAATGAGAAGACTTGTAACCTCTTCATAACCCCTTTTCCAATATTCATTTCGTATAAATCCC
ATTAGTTTGTTGTAAATTCGAGTACCATGAGGAAGAAAGAACCAACTTCCTGGGCTGAAAGTTA
CCAAATATACCAACTATTAATATTGCATACATTCTTTAACATACTACTCCAGAACATATTAAGT
TATATTGTACCTGAGGGGGTGGCAAAAGAAAAGTTCCTGCTTTGTACCTAATAATCTATGATCG
TATTTCTTTGCTTCTTCTATCTGACGGATATATTCCTGTGGAAAAACATTACACTAATGAGAAT
AAAGAAGTGATTGAAGAGCAATTAATGTACTAAGAAACAAGTGAAAAAAAAAATTCTCATTGTA
AAAGAATTACCAAAGCTCTCAAATTTTTGTCTAGGTAAGTAAAATGTGAACCTAATATGAGGAA
ATGATTTCTTAAAGTAATTTCTGCTATTAAACCAGATTTTGATATTCTTTGTATCACAGTAGGA
GAGATGAACATATTTCTCTATGCATCATAATCTTGTAGTGTTGCTTCAACAATCAGAAATTGTG
TTACTTGGAACGCGGATCGGTCTGGCAAGAGGAATAAGAACTGAAATGTAAATAGCTACTTATC
TGGACAGTATTTCAATAGGGGTAGTCTTCTTCAGTTAATAGGAGTGTAATATGATTTATTAGAA
CCTAAAACGTTTCTTTAGAACATGTATATATATTAATTTAACTGATTGGTACGATTTGTTTTTT
TTTTTAACTCAATTTATGTTTAATTAATAAAAATTAAGTCAAGGGTTAATATAATTTTTGGTCC
CCAAACTTAGCAACTACGTTAAGTATATTTCGCAATTAACTACTTTCAAAGTAAATCAGCTGTA
CATCAATAACTTTACCATTTATTAGAAAAAAATTATAAACCTATAAAATATAAGCATATCTGGA
GTAACATTGAATGGTAATTACTTCACGAGCCAAGATAAACTGACAATTTCAGCAGTCCACCTCA
CATCCACCAATAAACCCCTACTGAAATAAATACATAATCTGCAGGTCTCCTAATAGAAGTGTTC
TCTACTTCTAGTAAAAGCTCTAAATTATGTTCGCTAAATGGATCACTGATCCACTGAATTGGAA
CTCCACTGATCCATGGCTGGAATCAGGCAATCCAATTCCGAAATTGCAGGACGGAGAGCAATTT
CAGGTAACAGAGGTCACAAATAAAGCAAATCAAATAAATATACAGCGTATGTGGTACAATAATA
AAGTTGATGCCAGAAAATTAATCTCACCTTCAAACGTTTCTGATCAGGAAAAGATATACCATAA
ACTCTTTGTAAACTCTCACGATCTTTGTTTCCCCTCCAGTATGCAGAAGAAGCCTGAAGATAGA
AATTCATGAGTAGACCAGGAAATTGTGGTGAACATGAATTGAAATATCTCCAAAACATAGCTTA
GATCTAATCATGTATCGTGTTACCTTCATGCATGCAAATGCCTTTGCAAAAGAAGTATTGGGAA
TATGAGGTCCACGACACAAATCAACCAAGGGACCACATCGGTATACTGTGATAGTTTTATCTGC
AGGCAAATCGTTGATGATCTCAACCTGATTATAAAAGTTACCATTAAAGAAATTAGTGCACTGG
AAAAACATAGAGGTAGAAAGGAATAGTTTCAATTGATATGGTAGAAAGGAATAAGTCCAATTCA
TATGAAAATTTCAAAATAACACCACTCAACTTGCCTTAAAATTATTCTCAGAAAACATCTCAAG
GGCTTGTTCCCTTGTCACTTCAATGCGTTCAAAAGGTTGCTTTTC
						
					

			
		

Sequences
Splice junction sequence	TTCAAAATAACACCACTCAACTTGCCTTAAAATTATTCTCAGAAAACATCTCAAGGGCTTGTTC CCTTGTCACTTCAATGCGTTCAAAAGGTTGCTTTTCctgctgaaacctcctgacacgagttaac ccagtcagtgccccactagcctcatttcgatgcaagaccccaaaatcagccatgcgaagaggta gttctgca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCTGAAACCTCCTGACACGAGTTAACCCAGTCAGTGCCCCACTAGCCTCATTTCGATGCAAG ACCCCAAAATCAGCCATGCGAAGAGGTAGTTCTGCATGAATGAGAATACAACAAAGCCAGATAG GAACCTCTTTCAGAAAAACATAATTTAAATAAGCACATTGTAAGCTACAGAAGAAAAATAAATA AACTACATTGACAAAATTATATATCTTGGTAAAGACTGGGCCATATAGCAATTACATTAGAGGC TAAAAAAAGAATCAAAGGGCAAAAAGATGCAGAATGGAATACATGAAAATGTATTCAAGCTAAT ATGGTTTCAGAAGATTTTATAATTAGAACAAACTCATTCACTAATATATAATGGTAACTCATTA CCATGAAGTATGAAACAAAAGGGAGCAAAGAAATGTTTATCCAACATTTTAAAGCTTGTACATG GAAAATTTTATAAAGCACAAACCAAGATTGGATGCTCATGTTCGGAGCAACAACATGATGAAAT AAACAAAGGCGCATAGCCTAAGAATGCTTTTTTTAAGCTCTCCTCACAGGGCAATGAAGTTACA ATGCGGTCTATGGTTGGCATGCACGCTTTCAGGTGATTTTGCTTGATCACATATAATTTAGAGA GAGAAAGAAAGAATGCAAAGGGGAGCTTCTTCTCATGTGCAGTACCAAAGGTTTTCTTGCCATA TGTAAAAAGTAGGCAAAGCATAGATGCATATGAACTGACCTCTATAAGAACGAACCCTGTGCTG AAACATTAAACAGTGCCCTGGGCAATTCATAGGCTTCAGTCCAAACTCTTGTTTTTCAATCTGT CGCAGAGCGAAACATCATAAAAAGGATCATCGATAGAAGACTAAATGCAGAAATGCACTTTTCA ACAAATGTTTGTTAAATTCTAGGAAGTCCACATCAAAATTCACTCTACAATTAAAACAACAGAC AAGTTCAATTTTTCCATAGTTGCACAAAATCTCACCTCAAACAAAAACATATTCTCCTTATAAT TTGCAGCATGGCCAGATGTTTCCCAAAGATTCATATTATACATGTTGGGTGACTTAACCTGTCA AATTATGCAACTTTTTTGATTCAGTATTCAAGTAACAGAGTTTTAATTAAATCTCTAAAATAGA GCAAATGAGAAGACTTGTAACCTCTTCATAACCCCTTTTCCAATATTCATTTCGTATAAATCCC ATTAGTTTGTTGTAAATTCGAGTACCATGAGGAAGAAAGAACCAACTTCCTGGGCTGAAAGTTA CCAAATATACCAACTATTAATATTGCATACATTCTTTAACATACTACTCCAGAACATATTAAGT TATATTGTACCTGAGGGGGTGGCAAAAGAAAAGTTCCTGCTTTGTACCTAATAATCTATGATCG TATTTCTTTGCTTCTTCTATCTGACGGATATATTCCTGTGGAAAAACATTACACTAATGAGAAT AAAGAAGTGATTGAAGAGCAATTAATGTACTAAGAAACAAGTGAAAAAAAAAATTCTCATTGTA AAAGAATTACCAAAGCTCTCAAATTTTTGTCTAGGTAAGTAAAATGTGAACCTAATATGAGGAA ATGATTTCTTAAAGTAATTTCTGCTATTAAACCAGATTTTGATATTCTTTGTATCACAGTAGGA GAGATGAACATATTTCTCTATGCATCATAATCTTGTAGTGTTGCTTCAACAATCAGAAATTGTG TTACTTGGAACGCGGATCGGTCTGGCAAGAGGAATAAGAACTGAAATGTAAATAGCTACTTATC TGGACAGTATTTCAATAGGGGTAGTCTTCTTCAGTTAATAGGAGTGTAATATGATTTATTAGAA CCTAAAACGTTTCTTTAGAACATGTATATATATTAATTTAACTGATTGGTACGATTTGTTTTTT TTTTTAACTCAATTTATGTTTAATTAATAAAAATTAAGTCAAGGGTTAATATAATTTTTGGTCC CCAAACTTAGCAACTACGTTAAGTATATTTCGCAATTAACTACTTTCAAAGTAAATCAGCTGTA CATCAATAACTTTACCATTTATTAGAAAAAAATTATAAACCTATAAAATATAAGCATATCTGGA GTAACATTGAATGGTAATTACTTCACGAGCCAAGATAAACTGACAATTTCAGCAGTCCACCTCA CATCCACCAATAAACCCCTACTGAAATAAATACATAATCTGCAGGTCTCCTAATAGAAGTGTTC TCTACTTCTAGTAAAAGCTCTAAATTATGTTCGCTAAATGGATCACTGATCCACTGAATTGGAA CTCCACTGATCCATGGCTGGAATCAGGCAATCCAATTCCGAAATTGCAGGACGGAGAGCAATTT CAGGTAACAGAGGTCACAAATAAAGCAAATCAAATAAATATACAGCGTATGTGGTACAATAATA AAGTTGATGCCAGAAAATTAATCTCACCTTCAAACGTTTCTGATCAGGAAAAGATATACCATAA ACTCTTTGTAAACTCTCACGATCTTTGTTTCCCCTCCAGTATGCAGAAGAAGCCTGAAGATAGA AATTCATGAGTAGACCAGGAAATTGTGGTGAACATGAATTGAAATATCTCCAAAACATAGCTTA GATCTAATCATGTATCGTGTTACCTTCATGCATGCAAATGCCTTTGCAAAAGAAGTATTGGGAA TATGAGGTCCACGACACAAATCAACCAAGGGACCACATCGGTATACTGTGATAGTTTTATCTGC AGGCAAATCGTTGATGATCTCAACCTGATTATAAAAGTTACCATTAAAGAAATTAGTGCACTGG AAAAACATAGAGGTAGAAAGGAATAGTTTCAATTGATATGGTAGAAAGGAATAAGTCCAATTCA TATGAAAATTTCAAAATAACACCACTCAACTTGCCTTAAAATTATTCTCAGAAAACATCTCAAG GGCTTGTTCCCTTGTCACTTCAATGCGTTCAAAAGGTTGCTTTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.106703385

Conservation Information
Conserved circRNAs	NA
PMCS	0.106703385

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							7726049-7723113(-)
7725800-7723134(+)
7725876-7723114(+)
						
						Potential amino acid sequence
						
							MFSENNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRE
SLQRVYGISFPDQKRLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKL
MGFIRNEYWKRGYEEVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMF
QHRVRSYRELPLRMADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNF
KVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYG
ISFPDQKRLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNE
YWKRGYEEVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSY
RELPLRMADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNFKVEIIND
LPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYGISFPDQK
RLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNEYWKRGYE
EVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRM
ADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNFKVEIINDLPADKTI
TVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYGISFPDQKRLKEYIR
QIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNEYWKRGYEEVKSPNM
YNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRMADFGVLH
RNEASGALTGLTRVRRFQQ(-)
MRSTTQINQGTTSVYCDSFICRQIVDDLNLKIILRKHLKGLFPCHFNAFKRLLFLLKPPDTS*(
+)
MISTLKLFSENISRACSLVTSMRSKGCFSC*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	7726049-7723113(-) 7725800-7723134(+) 7725876-7723114(+)
Potential amino acid sequence	MFSENNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRE SLQRVYGISFPDQKRLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKL MGFIRNEYWKRGYEEVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMF QHRVRSYRELPLRMADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNF KVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYG ISFPDQKRLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNE YWKRGYEEVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSY RELPLRMADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNFKVEIIND LPADKTITVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYGISFPDQK RLKEYIRQIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNEYWKRGYE EVKSPNMYNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRM ADFGVLHRNEASGALTGLTRVRRFQQEKQPFERIEVTREQALEMFSENNFKVEIINDLPADKTI TVYRCGPLVDLCRGPHIPNTSFAKAFACMKASSAYWRGNKDRESLQRVYGISFPDQKRLKEYIR QIEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRIYNKLMGFIRNEYWKRGYEEVKSPNM YNMNLWETSGHAANYKENMFLFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRMADFGVLH RNEASGALTGLTRVRRFQQ(-) MRSTTQINQGTTSVYCDSFICRQIVDDLNLKIILRKHLKGLFPCHFNAFKRLLFLLKPPDTS( +) MISTLKLFSENISRACSLVTSMRSKGCFSC(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.008G053600_circ_g.2

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