Detail information of BGIOSGA031434_circ_g.1


General Information
CircRNA Name BGIOSGA031434_circ_g.1
ID in PlantcircBase osi_circ_008682
Alias Chr10:23651463_23651794(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20768924-20769256  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031434
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA031434-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGATGGGGAGCATCCGCACCACCTGCTTCACCTCCTCCACGTCCGTCCTCGTGCACAGCCTC
CACTTGCTCGCCATCGCCGGCGACTCCGCCGCCGACcgcgctggagcgggcgacggccgtgcgg
gtgtggccgtggcgcggcgcgcgagcggggacgacgaggcggtcgtagaagggacggtgaggag
gatggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCGCTGGAGCGGGCGACGGCCGTGCGGGTGTGGCCGTGGCGCGGCGCGCGAGCGGGGACGACG
AGGCGGTCGTAGAAGGGACGGTGAGGAGGATGGAGGCGATGAGGAAGACGGTGAGGGAGCCCGC
CGGGATGAGGAAGCCGCCGGCGAGGCGGCGGTCCATGAGCTCGGCCTGCGCGACGGCGAAGGTG
GTCATCTGGGCGTGGATGGTCCAGAACATGATGGTGGTCGCCCAGATGGGGAGCATCCGCACCA
CCTGCTTCACCTCCTCCACGTCCGTCCTCGTGCACAGCCTCCACTTGCTCGCCATCGCCGGCGA
CTCCGCCGCCGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021