Plant Circular RNA Database

Detail information of Os02g0805600_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0805600_circ_g.2
					
						ID in PlantcircBase
						osa_circ_017036
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 34368245-34369137  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0805600						
					
						Parent gene annotation
						
							Similar to Alcohol dehydrogenase, zinc-containing. (Os02t0805600
-01);Similar to Alcohol dehydrogenase, zinc-containing. (Os02t08
05600-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0805600_circ_g.3 Os02g0805600_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0805600-01:4
Os02t0805600-02:4

General Information
CircRNA Name	Os02g0805600_circ_g.2
ID in PlantcircBase	osa_circ_017036
Alias	NA
Organism	Oryza sativa
Position	chr2: 34368245-34369137 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0805600
Parent gene annotation	Similar to Alcohol dehydrogenase, zinc-containing. (Os02t0805600 -01);Similar to Alcohol dehydrogenase, zinc-containing. (Os02t08 05600-02)
Parent gene strand	+
Alternative splicing	Os02g0805600_circ_g.3 Os02g0805600_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0805600-01:4 Os02t0805600-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACC
TGCAACCCATGCTTGCTCGACGATTGACCATACAAGgtgtgcgcgctgctcagcagcggcgggt
atgcggagaaggtggtggtgccggcggggcagctgctcccggtgccggagggggtgtctctgac
ggacgccg

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 529
Transcript exons: 34368245-34368424,34368506-34368587,34368687-34368794,34
368979-34369137
GTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGC
TCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGT
CTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGA
TCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTA
CTGCAGGTAGTGAGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTA
CAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATT
CTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGAC
TTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCG
ACGATTGACCATACAAG
						
						Genomic sequence
						
							GTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGC
TCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGT
CTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCGTAAGATAACTT
CTCTCCTTTTCAATCCCCCATTGACTCCATGATTCATTCCTGAGCACGGTGCATCCTTGGTGTT
TGCAGATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGG
AATTAAGGTTTTTGTTACTGCAGGTTTGTTTATAGTAGAACAAGAATAGATACAGTAGGGAGTA
TATAATAGGATGTTGCAGAGATCGCTCAAGTAAATGCTGTTACACTATGTGTTTGTAGGTAGTG
AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGA
TTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTATATCGCACGCGTTCACCATTTTT
GTGTGTTCATGTTCATATTATTTTCCCCAGCCAATTGGTACTTATATGCAGATGGATTTCTTAT
AACGGCATTTCTCCATGGAACTGTCTATAATGTTTGATACCTGCCAAGTTTGCATATGCTTTAG
TGACTCTTGACATGGAAGTATATTTACCAGGTGTTGATGTCATTCTGGACAACATCGGTGGATT
GTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAA
GGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAG

Sequences
Splice junction sequence	TTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACC TGCAACCCATGCTTGCTCGACGATTGACCATACAAGgtgtgcgcgctgctcagcagcggcgggt atgcggagaaggtggtggtgccggcggggcagctgctcccggtgccggagggggtgtctctgac ggacgccg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 529 Transcript exons: 34368245-34368424,34368506-34368587,34368687-34368794,34 368979-34369137 GTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGC TCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGT CTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGA TCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTA CTGCAGGTAGTGAGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTA CAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATT CTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGAC TTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCG ACGATTGACCATACAAG
Genomic sequence	GTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGC TCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGT CTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCGTAAGATAACTT CTCTCCTTTTCAATCCCCCATTGACTCCATGATTCATTCCTGAGCACGGTGCATCCTTGGTGTT TGCAGATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGG AATTAAGGTTTTTGTTACTGCAGGTTTGTTTATAGTAGAACAAGAATAGATACAGTAGGGAGTA TATAATAGGATGTTGCAGAGATCGCTCAAGTAAATGCTGTTACACTATGTGTTTGTAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGA TTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTATATCGCACGCGTTCACCATTTTT GTGTGTTCATGTTCATATTATTTTCCCCAGCCAATTGGTACTTATATGCAGATGGATTTCTTAT AACGGCATTTCTCCATGGAACTGTCTATAATGTTTGATACCTGCCAAGTTTGCATATGCTTTAG TGACTCTTGACATGGAAGTATATTTACCAGGTGTTGATGTCATTCTGGACAACATCGGTGGATT GTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAA GGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.26959832

Conservation Information
Conserved circRNAs	NA
PMCS	0.26959832

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34369111-34368567(+)
34368513-34369065(-)
34368740-34369040(-)
						
						Potential amino acid sequence
						
							MLARRLTIQGVRAAQQRRVCGEGGGAGGAAAPGAGGGVSDGRRRLARGGLHRLVDRLRDQPPLP
QRIVPHPWWIEWNWYICYTDCKAPWN*(+)
MDEERFAGGEVAGHEDGRPDGAGHLGQAGGVRQRHPLRHREQLPRRHHHLLRIPAAAEQRAHLV
WSIVEQAWVAGSLQLQRLLGNQ*(-)
MHTSAPKPLQAASFSSLPAVTKTLIPRCFAICIANVPIPLDPPWMRNDSLGERWLVTKTVDQTV
QATSGKPAASVRDTPSGTGSSCPAGTTTFSAYPPLLSSAHTLYGQSSSKHGLQVHFSYSASLET
NDEKSTINS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34369111-34368567(+) 34368513-34369065(-) 34368740-34369040(-)
Potential amino acid sequence	MLARRLTIQGVRAAQQRRVCGEGGGAGGAAAPGAGGGVSDGRRRLARGGLHRLVDRLRDQPPLP QRIVPHPWWIEWNWYICYTDCKAPWN(+) MDEERFAGGEVAGHEDGRPDGAGHLGQAGGVRQRHPLRHREQLPRRHHHLLRIPAAAEQRAHLV WSIVEQAWVAGSLQLQRLLGNQ(-) MHTSAPKPLQAASFSSLPAVTKTLIPRCFAICIANVPIPLDPPWMRNDSLGERWLVTKTVDQTV QATSGKPAASVRDTPSGTGSSCPAGTTTFSAYPPLLSSAHTLYGQSSSKHGLQVHFSYSASLET NDEKSTINS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0805600_circ_g.2

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