Detail information of BGIOSGA007464_circ_g.7


General Information
CircRNA Name BGIOSGA007464_circ_g.7
ID in PlantcircBase osi_circ_003630
Alias 2:1808665|1813499
Organism Oryza sativa ssp. indica
Position chr2: 1808665-1813499  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA007464
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA007464_circ_g.8 BGIOSGA007464_circ_g.9 BGIOSGA007464_circ_g.10 BGIOSGA007464_circ_g.11 BGIOSGA007464_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA007464-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGAAGACAGGCATGATGCAGAACTTGGTGATGCACATGAAGAAGATCACAAAGAAGCTGAA
CAAGATTATTTGCCTGTCTCTAGTTTCCTGATGAACtcaacaaatcccagagcaagaatcagtt
gaagacatgaagtgcactgacaccacagaacatccaggagaaaccccagaaagcattgtgtcta
cttctgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAACAAATCCCAGAGCAAGAATCAGTTGAAGACATGAAGTGCACTGACACCACAGAACATCCA
GGAGAAACCCCAGAAAGCATTGTGTCTACTTCTGACGAGCTTACTAAAACAGGAGAGATCACAA
CAGTAAAGGAGGCGACTTTTGACACTCAACAAGCGCAGAGTTTCACAGATCAAGAAACCGATCT
CAGTAGTTCCTCCAATCCTGAAGAGGCAGTGCAAGAAAGTGACTTAGTCAAAAGTGAGCAGGAA
ACTGATGTTCAGCAAGAGCAAGAACTGGACTCCACAGAAGAAACCAAAGGCACTGAAGATTACC
AGCAAAATGGAGTTTCTACCTGTGAGGAGTCAGTGACTGAGGTTGAGCCAAACGTTGATGATCA
GCATGTGCAGGAGAATAAATCAGCGGTAGAAGTAAAAGAAAATGAAGATACAGAAACTGAAGAA
ATATCCAAGCAAATTAATTTTACCACTTCTGAGAATGGAGCTCAAGAAAGCAGTGAACAAGAAG
CCGACCAACCTTTTTATGTCCAACCCGTACAGCAGCTTGAATTAACCACAGATAGCAAGGACAA
TCAACTCGTAGAGGCAGAAGAAACATCCAGCCAAAGCAACATTGTCACCCCTGAAGATCCAACT
GCAGAAGATAGAGTTGCATATGAAATTGACCCATCTGTTGATATTGATCAAGGGCATGAACTAG
AATTAGTGGAAGAAGTCAAGGATACTGATGCCATTGAAGCTGAAGAAACCTCCCATGCAGGCCA
AGCAGTTTCTTCAGCGGAGAAATTTTCAGAAAGCAATCTATCAGCTGTTGAGTTGACTCATGGT
ATTCAGCAAGTGCATTACTTGGAGACTATGGAAGAAATGAAGGGCACTGAAGGCACTTGTGATG
AAGAAATCTGCTATGAACAGACAGCTACTTCAGAGGATCCATCTCCAACAGATAATGGAAAATC
ACTACAAGATTATCATGTAGAATCAAATGAAGAAAATTTGGGTAATGGAATCGGCGATGTAATT
TCAGTGCATGAAAAGATAGAAGATAATATACATGAGTCAGCAGAACTGAAGGTATGTTCAAATT
AAGTATCAACCAATGCTTTTTCTCATCCATCTAAAATGTTTACAATACATAAAATAGTAATGCA
TATTTTAGGCAGTGCTAACTGCTAAATTTTATAAGGACTGACTTCTGAAGTAAATGATCACTAA
TGATGGTTTCCATGATTCACTTTAGACATTAAAATGAACAAACTTGGTATATCTAACTTTGCCA
CAATGCTGTGTATAGTAGTACATTATTGGTTTGTTGGTTGAGTATATTGTCAGACAAGATGTAT
ACCAAACAATACCAAGTTTTAAACTACTGGTTACAAACTGTTTAGTTAAATCAATATGGAAAGT
TTGAGAAAACACAGAGGTTGTACATTAGAGTTCAAAAGCTGCAAAATAGACTGCAGGGTGAACA
GAGGATGCATAAATATTTCTTGCCACGTTGAGTGAAAATTGCACTATATGATCAAAGTTATGAA
CTGCAAATTAAATTGTAAAAGAGTGTTATATTTGAGTGCTATAATTGTACAAACCCCAGTAGTC
TTTTTCTTTTAACTCGGACTTAAGGGGGCCGCTGCACCCAAGAGAGTTCTATCATTCTGAATTC
CGAAATATGCATCTAGTTCTTTGAATTTTAGGACTTGCAGGACAACTCACTAGTGTATTTCATA
CAGGATGAAACATCTGAATTGGGTGAAAAAACTCAGATCAGTGCGAACAGAATTGAGGAAAATG
ATGATCACATTTCTACTGAAGATACAGAAGAGACTTCCAACAATACAAATCTAGTCAAAGAAGG
GCCAAATGAACATGGTTCAAGCCAGACATCAAATGTTCAAGATAATAAGCAACTTCATGATGTT
GGACTTCAAACACAAGTTCGTGAAAGATCAGTGGATATTGGGCAACAAGATGAGGACATGAAGA
ACGTTAACTTGGATCAACAGCAGAAGGAAGATGAAGAAATTGAGAAGCAGAAGGAAGATGAAGA
AATTGAGAAGCAAAAGGAAGAACTCCAGACAGATGAACAGAAACATGATGACAAGAGGGTTGAT
TTCATCATAGACACACAAGTGGAGTCCATTGATGCATTTCAGGTGAATATCTCTGATACTAACT
AATTTCATGTTCTATTTTCATCAAAATCTCTTGTAACCAGAAGCACGGTGAAAGTAAGTTACCA
TCCAATGAAATTTTGCAGGCTGAACAAACAGATTCCGTGGTTACTGAAATGCTCAATGATGAAG
TAACTCAACATGAACCCGAGGATTCCATCCCAAGAACTACAGATGCGATGGTTGAAAACATTAC
GGAAATAAAAGAAGAGACTGAAGAAGAGAATGGACCAAATAGTGGTGGCACCTTAGAGGTTTCT
GCCAAAAACTATAATGAAGATGTGCATGAGAATACAGAAAAGGATGCAGTGGTAGAAAAAACTT
CAAGTAGTGAACATGATGAAATAGCTGGTGAAATTAGAAATGAAGAGGTCAGTACAGAATTTCC
ATTGATGCAATGTGACAAATTTAGACATATTCTAGTTCAACTAACTGAAAATTGTTAATTTTCC
AAATTAGAAATGTAAATAAAATGGTAAAAAAGTTTTTCATTATACAGGTAACTTATGTCACTGT
GAGTATGATGGGTGAGTAACATTGATTAGCAAGCAACTAAGAATTCTTTTTAGCACTATCATCT
CATTCTTTTGATTTCTTTTGGCAATACAAACTTTGAAGCATTACTGATTACTTCTCTTAGCATA
GAGGATTGTTATGGACTAACTTTTGAAGTAGAAGTACCTTTAAGAAATATGTAAATACAGAATG
ACTTATGCTGCGATTAGATTTCATATGACTAAATCTATGCTGAACAACATGGTTTGGTGAAAGT
GTTTCATTGCCTATACTGAACAACATTGTTATCTTTTGCTCAACTTGCAGGTTGAACCTTGTTT
GGCATCATCTCTGGAGAGAGATCTTCAAGTTGATTCAGACCTTTCAAATGACCAGATGCTAGAG
AATGTAAGATTTGTTGTAGTGAATATTACCCAATATACATAATTTCATAAACATTGAAAATAAT
GTTAGCCACCATTTTTTTTCTTTCGAAGAATGAACGAAAAACAGTGATCTTGAGTGAAAAGAAA
TGGAAAATGGAAAGGATATAAAGTTATACAAAATAACAAAAAGTGAAGAGAGATGAACTTGAGT
TTTGCTACTTTATAATATTATTTCCTTCGCAGTATATGCATGTGCATTTAAGTGGCAGATTTAT
CTATGAGCTTGGCCATGGACCCTTCTTAGTTCTTAACACAAAAGACCTGCAAGCCTTTTGAGTG
CCAGCTCTTCTCTAAGTGAACATTTCCCAGTTTCTATCAACAATTGCATGCCTCTCAAGATTAA
CTCATTTCTGAATATGGCATCCCAAAAGCATAGTAGCTGTTATCATTCATTTACTTTAATGCTA
TCACATAATTATCAGAGTAATGAGCTGTCCTATCTGTTGTACAGAATCCTATAGCTGTTCCACA
GAATGATGAATACATGTACAGAGCGGAGGAAGGATACACAAACAAAGTCAACGTTGACATGCAT
GCCATTCAAGAATCAGATAAAGTGATTGAAGATGCAGAAGAAAAACCAGGAATGCAAAATGAAG
ACAATGTTGTTCACCATGATGAATCTCTGGTCACAACTCAAAAGGAAGAGGCATCCCAAGTGCA
TACTGATGAACAATACAGTGCAGACACTAAAATGGATGATACCGCAATTTCTTATGCAGAAATG
ACACATGAAAATACAAGTACAGAGCCCAGAGAAGTTGAAGATACAAAGGAAAAGAAAGGATTCA
ATGACTTTCCAGAATTTGTTGTAGAAACATCCAAACAGGATGATGTTGACCAGACTTTAGCATT
CATCACCAGGTACCTATACACTTTACTAGTTATACTCATATGCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTCCATCATTCAGGTTGAAGATGAAAAGTC
GGCAGAAACAGAGAACAATAGCGCAGAATCTGAAGCTGTGCAACCAAAACTTGATATAACGATT
GCTGAGACAAATAATGACAATAATTTGTCTACAATCAATCCCTTGCCTGAGCATGAAACAGAAA
ATGCCTCAGATATAAATCAAAACAGACAATATCAGGAAGCAACCAATGAAGATGCTATCGACAA
CATTGAAACTGGTCGTGTCGAGAAAATGGAGACAAGCTATACTGCAACAACTGAAGTGGTCACA
CTCAATGAAGATATCTGCGATAAGGTCAGAAGTCAAAACTCATTATATATGTTATTTAAGATTA
ATGTTTAGTCCTTCTAAGCTATTTTTTACTATTCCATTTAGGCTAGTGGAGCTGATGGAGTACC
ACCTGATGGAAGTCTTAAGACATCTGAGGACAACCTTGATGTTTCATCTGTAGTTACAGAATCA
GAGGGAGAAAATATTAACAAGGAGACGGAAGATCACAAGCTTGCTCTTCCTGTGCATCCTACAC
AGGATGAAAACACAACTGAGCAGGGATTTGGTTTGGAAGATACAGAAAAAGAGTCCATGTCACC
AGAGAAGGCACTGCCTGCTGAACCAGAGGAGCAAGAAGAGAATCAAGTAACCAAAGAACAAGAT
GAAGAAGACAGGCATGATGCAGAACTTGGTGATGCACATGAAGAAGATCACAAAGAAGCTGAAC
AAGATTATTTGCCTGTCTCTAGTTTCCTGATGAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021