Detail information of AT2G39200_circ_g.1


General Information
CircRNA Name AT2G39200_circ_g.1
ID in PlantcircBase ath_circ_017359
Alias At_ciR3824
Organism Arabidpsis thaliana
Position chr2: 16356849-16358133  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G39200
Parent gene annotation MLO-like protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G39200.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGTATATGCTAATTATTACTTACCATAATAAAGCCATGTCTTAGTGTAAGATAATCTACTTT
TGTCACTGATCCAAAGAACTGTCTGAAGAAACATGTctgagtaacaagagcatagagaggtaga
gtgatgtagctgcatagaacttgtattaataccctgccgtatacaacaagaagaaatttatcgt
taaggttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGTAACAAGAGCATAGAGAGGTAGAGTGATGTAGCTGCATAGAACTTGTATTAATACCCTG
CCGTATACAACAAGAAGAAATTTATCGTTAAGGTTCAAAACATACAAAAGATAATATTATTTTG
TTGTATGTTATGTATAGTTGAGGAAGTTAACAAACCCCATGGTGATCCTAATTGCAATGTCTTC
TGTTTTGTGGTGGAAGCAGTTTTTGAGTGTGAATTCGTACTGCAAAATTAATTCATAACCAAAA
TCATTAATTTTTTTTCAAAAACATATATAAATTGGAAGAAGAAAATGGATTGTTATTGCTCACA
GTGCTCCAAACGAAGAAAGCCAGTTGAAATGCATTCTATAAACAAAATACATAGAAGAAACAAA
ATTTAGAAAGTCATAAGAAAAGGGTTGACAAAAAAAAAACTTAAGATGGTAAATGTAAAAAAGT
AAATAAGTGTACCGTGAAAAGAACCAAGTGAATGAGGAAGAGAATGAAACGAGGACGACCAAAC
CAAAAGAGATCATCGCCCGGTTCAACCACAGGAGCTCCTTTAACCACATCTCCTTTTTCTTGAA
TCCTTAATCCTAATTTCGATATTATCATTTGAAGTTTTGCTCCTACTATCAATATCACCTTCAA
TATTTACACCAACCATATACAATTATTGTTTATTCACAGCTACATAATTAATACACTGAAGACT
TTGAAGTGAAATTTTTTATTACTTACAATCAAGGGAAGGAAGGGCAGCCAAAGATATGAGTCCC
ATCCTATTTTAATTTGAAAAAGACATTGAAATTTAGAAAGATATTTCGTTGATATATAACGATT
TGCTTAATCTCTTAAATGAATTGTTAGAGAATTAGGACATACCATGTGTATTGGTCAATATGAA
TAAGACAGCAATGCACCATATCAGTGGGCTGCATTCACACAAAGATATTTAATCAGATATTTAA
CTTTTGTGCAAGATTGTTTGAACAAAATATTAACAAACTTGGTTTAAATAAAAATAAAAAATGG
GACATACTGTACCTTATACCGACAACCACCGTGAAATCTTGTTCCAAAGATCTTTCAATGTATT
TTTGGAAATCGAAACGAGCGGCACTTCCTGCTGGCAAATGTGCCTGCACCAATTCACCAATTGG
AGTAATTAATCAACAATTCATAGTGTATTACTAGTAGTATATGCTAATTATTACTTACCATAAT
AAAGCCATGTCTTAGTGTAAGATAATCTACTTTTGTCACTGATCCAAAGAACTGTCTGAAGAAA
CATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.159217016
Functional Information
Coding potential Y
Potential coding position 16358062-16356851(-)
Potential amino acid sequence MAHLPAGSAARFDFQKYIERSLEQDFTVVVGISPLIWCIAVLFILTNTHGWDSYLWLPFLPLIV
ILIVGAKLQMIISKLGLRIQEKGDVVKGAPVVEPGDDLFWFGRPRFILFLIHLVLFTNAFQLAF
FVWSTYEFTLKNCFHHKTEDIAIRITMGVLIQVLCSYITLPLYALVTQTCFFRQFFGSVTKVDY
LTLRHGFIMAHLPAGSAARFDFQKYIERSLEQDFTVVVGISPLIWCIAVLFILTNTHGWDSYLW
LPFLPLIVILIVGAKLQMIISKLGLRIQEKGDVVKGAPVVEPGDDLFWFGRPRFILFLIHLVLF
TNAFQLAFFVWSTYEFTLKNCFHHKTEDIAIRITMGVLIQVLCSYITLPLYALVTQTCFFRQFF
GSVTKVDYLTLRHGFIMAHLPAGSAARFDFQKYIERSLEQDFTVVVGISPLIWCIAVLFILTNT
HGWDSYLWLPFLPLIVILIVGAKLQMIISKLGLRIQEKGDVVKGAPVVEPGDDLFWFGRPRFIL
FLIHLVLFTNAFQLAFFVWSTYEFTLKNCFHHKTEDIAIRITMGVLIQVLCSYITLPLYALVTQ
TCFFRQFFGSVTKVDYLTLRHGFIMAHLPAGSAARFDFQKYIERSLEQDFTVVVGISPLIWCIA
VLFILTNTHGWDSYLWLPFLPLIVILIVGAKLQMIISKLGLRIQEKGDVVKGAPVVEPGDDLFW
FGRPRFILFLIHLVLFTNAFQLAFFVWSTYEFTLKNCFHHKTEDIAIRITMGVLIQVLCSYITL
PLYALVTQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015