Detail information of Os04g0452650_circ_ag.1


General Information
CircRNA Name Os04g0452650_circ_ag.1
ID in PlantcircBase osa_circ_024026
Alias Os_ciR222
Organism Oryza sativa
Position chr4: 22594350-22598905  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 183
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCGTGGACCACGGCGGACGGCTGACGTTCTCGGTGGTCATCACCTGCCTCGTGGCGGCCTCCG
GCGGCCTCATCTTCGGCTACGACGTCGGCATCTCAGgcggcgtctctcagatgaagccgttctt
ggcaacgttcttccccaaggtgctgatgaggatggccgacgcgaagagggaccagtactgcgtc
ttcgacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGGCGTCTCTCAGATGAAGCCGTTCTTGGCAACGTTCTTCCCCAAGGTGCTGATGAGGATGGC
CGACGCGAAGAGGGACCAGTACTGCGTCTTCGACAGCCACGCGCTCACGGCGTTCACGTCGTCG
CTCTACGTCGCCGGGCTCGTGGCGTCGCTGGCCGCCGGCCGCGTCACCAGGTGGCTGGGCCGGC
GCGGCGTGATGCTGATGGGCGGGGCACTGTTCTTCGCCGGCGGCGCCATGACCGGCGGCGCGGT
GAACGTCGCCATGCTCATCGTCGGGCGGATGCTCCTGGGGTTCGGCGTCGGGTTCACGAACCAG
GCCGCGCCGCTGTACCTCGCCGAGATGGCGCCCCCGCGGTTTCGCGGGTCGCTCACCGTGGGCT
TCCAGTTCTTCCTCTCGCTGGGGATACTCATCGCCAACCTGACCAACTACGGCACCGCGCGCGT
CCCGTGGGGATGGCGCCTCTCCCTCGGCCTCGCCGGCGCCCCGGCCGTGTTCATCGTCGTCGGC
GCCTTCTTCCTCACCGACACCCCGAGCAGCTTCGTGATGCGCGGGAAGGTGGACCGCGCCCGCG
CCGCGCTCCTCCGCGTGCGCGGCCACCGCGCCGACGTGGACGCCGAGCTCAAGGCCATCGTCCA
CGCCGTGGAGGCCGCGCGGGGCAGCGAGGACGTCGGCGCGTTCCGGAGGCTGGTCACCTGGCGG
GAGTACCGCCCGCACCTGACCTTCGCGCTCGCGCTGCCGCTGTGCCACCAGCTCAGCGGCATGA
TGGTCCTGACCTTCTTCTCCCCGCTGGTGTTCCGCGTCGCCGGCTTCGGCAGCAACGCGGCGCT
GATGGGCGCGGTCATCCTCGCCGGCGTCAAGTTCGCGTCGCTCATCCTCTCCACGCTGGTCATC
GACCGCTACGGCCGCAAGGTGCTCGTCATCGCCGGCGCCGCCCTCATGATCGTGTGCCAGGTAA
GTACGCGTACGTACCATACCATGCATGCAAAGTATGTAACGTTCGTTGCATCCGTCGTTTAGAA
TTATTGCTGTTTTGTGATCAAGGTGGCGAACGCTTGGATCATGGGGGCGAAGTCCGGGAAGCAC
GGGGAGGTGGCGATGCCGAGGGCGTACTCGGTGGCGCTGCTGGTGCTGACGTGCGTGCAGGGCG
CCGGGTTCGGGATGTCGTGGGCGCCGCTGATCTGGGTGATCCCCGGCGAGATCTTCCCGGTGGA
GGTGAGGTCGGCGGGGCAGGCGGTGAGCGTGTCGGTCACGCTGGGGCTCACGTTCGTGCAGACG
CAGACGTTCCTGGCGCTGCTGTGCCGGCTCAAGTACGCCACATTCGCCTACTACGCCGGCTGGG
TCGCGGCCATGACGGCCTTCGTCCTCGTGTTCATGCCGGAGACCAAGGGCGTCCCGCTCGAGTC
CATGGGCGCCGTCTGGGCGGGACACTGGTACTGGAGGCGGTTCGTCGGCGGCGGCGACGGCAAA
CCGGAGCAGCGCCGTTGACGAATCATCTCCGTGGATCTACACAAGTACCACGACTACACTTACT
TACTAATAAAGATGTGTGTGATAAGCTTTCGTGCCGGTCATGCATGCTGAACTAGTCAATTATA
AGCCTTGTCACTTTGTTCAGAGGGTCACAAAATTCTTGGGACCAGTTGACAACTTGCTCAAACA
AATATTGTGTTATCGGTGATGACTTGCGCGCGGTGACTTTGAGATCATTGATATAGTACCACGG
ATGGGTAATTATCAATACTCAATCGTAGAAAGAACGTGCTTCCGCTATATATCAGTGTACTACT
AGTCTACTGCTCCATCCGTCTCAAAATATAAGCATTTTTATATTTTAACATGATCTTCGAAATG
TTACTTTTACCAACGTTATCTATAAAAGTAAAATGTTTTAAATAAAAAGAGTTGCATATTGTGA
TAGTTTGTTTAATGATAAATCTAGTAGCATCAATTTTATATGATTGATCTTTTTTATTTTTTTG
CTATTAATAGTTAAAGTTACAAATATTTGATTTGGTATTATGTTAAAAATACTTATATTTTGGT
ACAGAGGGAGTAGTATACTCAACTCTACTTTAGTAAATCTACTTTGAATTTTATATTTCTGATA
CTCGAATTTGGTTAGCTAGTGCCTAGTGGACTAGTAAGTGAAAGAGAAAGACACAACTTGACCG
TAATCGCCTTTTTTAATGGAGGGAGCAAGAGAAAGGACAGAGATATACCGAAACGGATGGCTAG
AGCTGCAAATTAAAAGATATAATTAAACCATTAGAGGCTAATTAAAGATATATAAACCATTTTC
ATCGTCTAAAAAGATGGCTCTACGGCGGACTATCTAACAGTATCCTCTGCCGTACAGTCCATAC
CGTACCACCAATATGTGTATGTATCCCTATATATGTACTTTAGGGTCTATCTCTCAGTACGACA
CGTACGTACGGTAGAAAGATGTGCATCCCGGACTATTGAGACGGTTTAGGTATCATGACTCATG
CGGGGCTATTTGGTTGCCAATTTTGCACCCTGATAGAGGATTTTTTCTGCATTTAATTTGACAA
TCGGACACTTTTCAAAAACTAATTTCACAAATAAACTGTAGCCAAAACTTATTTCAAAAATAAT
TCTTTTTTTCAACGCCAAATCATATGGTGCTGAACTTAGACATATCAACGCTAAATAGCACGTC
ACTGAATGCATGTTGGCACACCGACTCAGTCTCCCATCCGTGGTGGCACATCATTCAGCATCAG
TTGACGTGGTGTTGAGGTATCTAAGTTCAACGCCGTATGATTTGACGCTGAACAAAAGGGTAAT
TTTTAAAATAAGTTTTGGCCACGGTTCATTTACGAAATTAGTTTTCGAAAAGGGTCAAATTATC
AAATTAAATGATTTTCCTAGGCGGAGACTTCCCAGCGTTGGTTTGCGTCCTGAGTGGCTGAAGC
TTTGCCTCATCTGAGCTGCTCAGACGACACAAAATCATCCAACAAGCATGAAATAAAATCATCT
AACAAGCATGAAGATAAGTGCCCACGCAAAACGAGATAAATCATTAGCACATAATTAATTAAAT
TTTAATTATTAAAAGCTTGAAAAAATGATTTATTTGATTTTTTTTATAGCAACTTCTATGTAGA
AAGTTTTCGCACGAAACATACCGTTTAGCAGTTTAAAAGGTGTGGTAACGAGGAAAAATCTGTA
TCTTGTTGGAGTTATATGTATCATGTGAGACGTGATTCGTCATTCGGGCATGTTACTCGGGTTG
CCAACCATTGTTACCCTTGTAATGACCAAAATTTTGTTCAACGGCCGATGTGAGCCTCAACTAT
TAGAATTTTGTCCGCTGCTCTAGAATTTTAGTAAAGTTGCAGTGTTCCATTTCCATTAAAGCGA
ATTGAAGACAAAATCTTGGGAGAGTTGCTTATGCTATTGTTTAGTTTGATATATCAATAAAAAG
TACCAAATCGTAATCGAAGAAGTTTTCAACAAGAGATAAGGTCTAAAGGTGTAAGTGGCGTATA
TAAATGGGAATTAACTAGGAATGGTTAGTTATGTATTAGTTGTTGCTCAAATTTTTATTTCAAT
ATGCAACTTGAAACCTTCATGTGTGATTCTCTTCGTACACTTCTTAATTGAAAAGAGCTCATAC
CATTTTCCTTTCTAAAAAAAATACCAAACCTTGGGTAAAGGCCCCCGCTTACTAGTGCAGCAGT
AACCCGTAGGAAGTACTTCCTCTGTTAAAAATATAACGATTCAGTTTAGGTTAAAAGTCTTTTG
AATCACATCAGTTGTCAATTTTTTAAATTTTGAATTGCATGGATTCCCTTTTCAAGCATCATTG
GCTATAAAATCATTGAAATACTTAGAATCATAAGAATATTATAAAATTTGAATCCTAGAAATCC
TTATATTTTGTTTTGGCACTGTGGTGAGCTTGCTATTACCAAATTTTGTAGTAAAACAAACAGT
ACCATTAAATGGTAAAAAAATGTAAGAATTTGTTAGGCATCAATTCAAATAATCCCTTAATCCA
AAATGGCTTGATGATTTTTCGAAAGTTGGCTTGAACACAGGAAGACAAGATAGAATATACTTGC
TTTTGTTGTGTCTTATTTAAAGCATTTGTCAGATGGTTGGAATGGTTGCACACGAAAGGAGCAC
TTGGTATCGGTAGCTTAAATAATCAAACAATGGAAATTTGTGATACCTTGAACCTTGTTACAAA
TAGCTATCTGTCTGATCCTCAAATTCAAGCTAGTGGGGTTAAGAGCGAGTTGACACTCCATATA
TATCTTTCATGTACACCTCTGAAACGTAAGAAAGCTCATCTGACCGCAGTTTAGCTCCCTCTTA
GACAGAGGCCAGAGGGAGAAAGAGAGAGAGAGAGAGGAGAAGGCTGAGACTGAACATTCAAGAT
GGCCGGAGGTGTCATCGTGGCGAACGACGGTGATGGCTCCGCCGTGGACCACGGCGGACGGCTG
ACGTTCTCGGTGGTCATCACCTGCCTCGTGGCGGCCTCCGGCGGCCTCATCTTCGGCTACGACG
TCGGCATCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.434252561
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2925
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015