Detail information of BGIOSGA019557_circ_igg.1


General Information
CircRNA Name BGIOSGA019557_circ_igg.1
ID in PlantcircBase osi_circ_015256
Alias Chr05:13062785_13068282(MH63RS2), Chr05:12863003_12868505(ZS97RS2), Chr05:13062785_13068282(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 14033915-14038812  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA019557_circ_igg.2 BGIOSGA019557_circ_igg.3 BGIOSGA019557_circ_g.1 BGIOSGA019557_circ_g.2 BGIOSGA019557_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATACTGGCTCTAATGTTTGTGCAGAAAATCTATGAATCTGTTCAGCAACTTCTACTCATCT
GATATCATTGTTGCATCTCCTTTGGCACTTATAAAGggggcaattgtgttcctgcccttacttt
ctgattcaattgtgattttaccccttctttttagggtttgtgattttgcccttgttttttcaaa
ttgaagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGGCAATTGTGTTCCTGCCCTTACTTTCTGATTCAATTGTGATTTTACCCCTTCTTTTTAGGG
TTTGTGATTTTGCCCTTGTTTTTTCAAATTGAAGCATCTGTTGCCCTTACTCTGTTAGGAGGAA
TTAACGGTGTTAATTTAGTAGCAGAAAGACTGGTGTGCCCTTTGCATTTCTTTGTGTGGATGTA
CTGTTTTTGCCCCGATATATGATGTGGACATTAACTTTGAGATTGTATGGCAACTCCACACAAA
TCAATTTATTGCCAGTTATTTTCAGGAACATGTCAGTTGCATATATTCATCATCACGAAGGGAA
AAAGAAAGGAGAACGCAACCAATTGTCCAAACAAATCTATTACCTAGCTTTTTCATGAACAAAG
AGATTGCACACATCAAAAAGGAGAAAGAACAGAGAGCCCAAGCAAAAAATAATCCCCAGATCCA
TCTAGCAGAGCCTCAATGATTCATCGCAGTTGCTTGCCGGTTGATTCAATCAACAAAGCAAACC
ATTAAACCCTCCCAGTTCCTCGGTGGCAACGGTAACTTTGAGCAAAGCTGGGATCCAACAAGGA
GGAGGCGCAGGATTCACATGAGACGATGCACCCAGCGGCAAAATGTCATGGCTGACGCAGTCGC
TGTCGAAGTGTCGATACCGCGCGGGAAATCAGAAGCCTGCCGCCTTTGCGCCTGCTTGCCTCCA
GCAGGCTCCGGTCCGCAGTCCCGACGACGGTCGGCCGCGCGTGCGCCTCCCCTGCGTTGGCCTG
TTATCCCCGCCGCGCCTCCCCTTCATGTCGACCCGTAGTCCCGGCGACATTCCGCGGCGCACGC
ACCTCCCCTTCGCGCCGCCGCCTGCTACTCCCCTGCGTCGCGTCGCCGTGCCTCCCCGTCGCCT
GTTCGTGTCGCCGCCGCTTGCTCGTGCCACCGGCACGGCCAAATCCTCTAGCCCTAGGTTTTGG
GATGGGGGAGGGGAATCCGTAGCTTTCCAACCCAATTCGCACAGCTACTTGAGTGATTTATTTA
CTCACCAGGGGTATAACAGTCATTGACAAATTACGAAATTATTTTTTTATTTTCTTCCCCCTTT
GTTTAACTCGGAAATTCTAGCCCCACTAACAGCCGTCAAAATCGAGGGCAAACAGCTACTTCAT
TTTGAAAAAGCAAGGGTAAAAACACAAACCCTAAAAAACAGGGGTAAAATCACAATTGAATTAG
AAAGTAAGGACAAGAACACAATTGCCCCTTTTTTCTCAGTAAAGTGATATGTTACTCTCTCTAA
GTGTATTTACAGTCCTAATTTTTTTTATTACAGGTAGTAGCTATCGTGACATAATGCATTGTAA
TAAGAAGCCATTTTATCTAAAAGGAGGTAGCACTGTGGATTCCAGTACAATGGACTCCTATCTT
ATGCATGCTGTAAGTCTCAGGGTAGTTATTTGGGCATCATATTGCAACAAAATCTATTATGACG
CTGATTACTTCCTTTGCTTCCAAATATTGCTTCATTTAGCATTCTGCTGGTCCAAATATTGCTT
TATAACCTCAAGGCATTTCTCAATCTTTTCTTCTATCCTTGCCCTTGTTAAGTAATTGCTATTA
CTCTTATGAATCAATGGCTAGGAATTCTGCCTGCTAGTTCGCTTTCATTGAACAAAAATATTCC
CTTGAATAAAATAAGAGTGCCTGTCTACATCTTTTCCAATGTGCTATACATGAAGGACATTTTA
TCTGTTCTGTAATCGCTGTGTTTTTGTCTAAAGGGCTTATATCTGGAATCAAAGAGAGTGATTT
GCAATGACATGATATTTGCAGTTGAATCATATTAACAGAACGAGAGAGATTGTTGTAAAAAATG
ATGCGAAGCTTAGGAGTGACCCTAGCAAAGATATTTTGGATGATAACTCATTCCTCGATCAGGG
CTTTACACGTCCAAAGGTAAATATAACTGGCACAAAAAAACTGTATTTTGGGTTGTATTTCCAT
TTATTTACCTTCATTGCAGCATTTGTATATACCTTTATTACAGTCCGGAAAATCTTCTGACGGA
GTTAAAACGCATATATGCAAACAGTACCAAAATGACATTATACGTTAAATGGATGCGTGTGCTT
TTTTATAGGTTATCACTTGACTTCTAATTGTTCCATGTATTTTATTAATTAAGATTTCCTGCCA
TACTGCTTTCTTGATGTTATACTTATATGCCGTTCTGCTGTGTATTATCTTTTGAACACTGAAA
CTTAATACTCTTTTTTCTTTGTAAATGTCCTTAGGTTCTTTTCCTGTTACCTCTAAAAAGCATT
GCGAGGCGTGTTGTGAAGAGGTTGATCCAACTGTCCCCACTGTCACAAAAGGTACACTTATATA
TTCTTTTTTAGCTGTTATAAGTAAACATTGAGTTCTTTACTTCAAAATACAGAAGGAACTTTTT
CTAGAGGGGGTGGTCTTCTTTTTTCTCAGAAATGGCATTTGAAATGTTGGTTCTGAGTGCACCA
GTGGTTTTGGACTGATTAATTACTTGAGCAGTGGAAGCAGTAGAGTGGTGGAGAGCACTAAAGT
AAAGATGATGAAAACCATTTTAGTTTCTCAACTAAACATGGTATTTTGAAGACTAGTTATAGTT
GTTCTCCTCGAAACAAAGTTATTGATAAATCTAAAACTATAGAAGTCTAAACTAAAGCCCTGTT
TCCTAAATCCTAATCCAACCATTTTTACAAGTACTCGCTCTTTGATTTATCTCATCTACGCAAC
TTAGTTTAGCAAATTGTTCTCTGTGGTATACTGAAAGAATATTTTGTTTCGTCTCTTTTAGGAT
ATCATTGCAAAATTCGAAGGGAAGTTTGGCGAATCAGATGATGAAGTAGAGGAGCCTGTTCAAA
GTAATAAACCTGCAGACTTTGACCTACTGTTTGCTGGAGATACTGATGATGAGTTCCTTTTTGG
GATAAAATATACAAAGTAGGTGTGCTAAACTGTTTAATGTAGCAATTTTCTACTATTGCACACT
TCAGCCTGTGCATTCTCAACACGCAACAATTTTTTTAAAAAGGAAAATGGTACTTAGGGCTCAG
TTGATAGAGCTCCAACTTCTAAATTTAACTCCAGGAGTTGGGTCTGGATTGGAGTTGTGGAGTA
GCCTAAATCCAGCTCCACCTCTCTAGTTCATTTTGTGGGAGCGCTCTAGCCAGCTCCACTCCCA
TTTTAGGTGGAGCTAAAACTGCTTGGCTAGGCTCCAGCTCCAGGAAAGGTGGAGTTGGACCCGT
CCCAAACATGCCCTTAGCTCTCCATTGACAACCTTTTATCGACTCACTTCCCAGATTTATTAAG
ACTAAGTAGTACAACCTAGTGATAGTTATCCGTCTTGTTTCACTTTGTCAGTTGATAGATAACA
TCATACTTTATGTCAGGAAATAAATCCTGAAATTTTCATGACTTGTGAGATGCTCTGCTGTGCA
GCTTTTTTGCTCTGTATTACTGTGTTGTGCATTTTTCTTTTGTCTTCAGGACTTGCACAGTTCA
TTGGTGTATGGGATCTTCTATTCTTATTAATACTACATGGTTTAAGGCATGCTTTAGTGCGGCA
TTCATGTCCTATCCAGAAACATAAAATAGTTCATATTTTATTTCGAATTAAAAGAGTGTGGAAG
AACTGGGCACCTTTGAAGTGCAAATGTTTCCTTTGGCTAGTGAGCAATAACCAGTGTTGGACAG
CGGACCGCTTGGCAAAGAGAGGACTGCCACACCCTGCAGCTTGTCCACTTTGTGACCAAGCAGA
GTAGACATCTCTTACTGGTTGGATGTGTCTTCTCCTGACAGATTTGGTTCTTAATTTTGCAAAG
ACTGGGGTTGGGAGGTATAGTTCCAGTACAAGCTTCCATCAATTTCATGAAATGGTGGTCAAGG
GTGACAAGAGGAAAGGACAGAGACACTAAGAAGGGGCTGAGCTCTCTGATAATTTTAGTAGTGT
GGGAGTTTTGGAAACATAGAAACGACTGTTTTTAACAGTGTCAATCCATGTGTGACCACTGTTC
TTCAAGCAGTGGTTAATGAGTGTATCCTTTGGTCGATGGTGGTAACTAATAAGCTCAAGGTGTT
CTTAGATAGGTCGCTATAGCTCTGACGGGATAAGGTCAGTTTCAGGTTCTTTAGTTTGTAAAGG
CCTAGCTAGGCCTGTGGGGTCTTGGTGAGGGGAGGAGCTCCCCTCCCAATTCCCTTGTTTTCTC
TTCTTCTTAATGAAATGATACACAACTCTCTTGCATATTCAAGAAAAAAAAATTCGAATTAAAA
TAAGTATATATTGGCCGAATCCTTGACTCTTGTTTTTTTAAGCTTGCTGAATCAGACAGGCATA
CTCAAGTTTGGTGCCGGTACCCACAATCGGGTTGCAGTACCACTGTTTCTTGTAGGAGAGCACT
GAATTCTGAAACATAGCTTTTGGATAGCCCTGTAATATGATACATTTTCTAACCAAGATATTTC
AAAAAAATTAACAAAGATATTTCAAAAAAATTAACAAAGGAATGCTATTCCTTTCGATTATCAT
TCATATTCAGCTGTCTGTCCAGTCAAGTTACTATGCTATTCTTCTCTTGTAATGCAAATTTCTT
ATTCTAGTTACAATAATCAACTAAGAACAAAACCGTTTTAAAATGTCTATCCCTTTATATTTTA
TGGCTAATTTTATGTCCAACTCTGAGTAAATCCCAGGTTTTAAACAAACTTATGCCCCCAAATT
TATATTTGATTGCATTTTAATATATATTTTGGATTTTGTTTTCCATGCAGATGATTTAGAAGTT
AATACTGGCTCTAATGTTTGTGCAGAAAATCTATGAATCTGTTCAGCAACTTCTACTCATCTGA
TATCATTGTTGCATCTCCTTTGGCACTTATAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021