Plant Circular RNA Database

Detail information of Os06g0486400_circ_g.12

			
						 General Information
					
						CircRNA Name
						Os06g0486400_circ_g.12
					
						ID in PlantcircBase
						osa_circ_030879
					
						Alias
						Os_ciR10372
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 16606755-16608826  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os06g0486400						
					
						Parent gene annotation
						
							Serine/threonine protein kinase domain containing protein. (Os06
t0486400-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0486400_circ_g.3 Os06g0486400_circ_g.4 Os06g0486400_circ_g.5 Os06g0486400_circ_g.6 Os06g0486400_circ_g.7 Os06g0486400_circ_g.8 Os06g0486400_circ_g.9 Os06g0486400_circ_g.10 Os06g0486400_circ_g.11 						
					
						Support reads
						2/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0486400-01:3

General Information
CircRNA Name	Os06g0486400_circ_g.12
ID in PlantcircBase	osa_circ_030879
Alias	Os_ciR10372
Organism	Oryza sativa
Position	chr6: 16606755-16608826 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os06g0486400
Parent gene annotation	Serine/threonine protein kinase domain containing protein. (Os06 t0486400-01)
Parent gene strand	-
Alternative splicing	Os06g0486400_circ_g.3 Os06g0486400_circ_g.4 Os06g0486400_circ_g.5 Os06g0486400_circ_g.6 Os06g0486400_circ_g.7 Os06g0486400_circ_g.8 Os06g0486400_circ_g.9 Os06g0486400_circ_g.10 Os06g0486400_circ_g.11
Support reads	2/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0486400-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGGAACTGCTGCATAGGTGATGTAGATTCCATATTTGGTTGCTCCCTCAAATCAGTAGCAGTA
GGGGGATCATCATCCCCACAAACATCAAAGCAAGATcttttgagcaatactatctgatgtaacc
tgaaaacgcccccttcgctggataacttttccttcggattgctcctcaggttcaactgctctca
aaaacagt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 439
Transcript exons: 16606755-16606837,16606974-16607062,16608560-16608826
CTTTTGAGCAATACTATCTGATGTAACCTGAAAACGCCCCCTTCGCTGGATAACTTTTCCTTCG
GATTGCTCCTCAGGTTCAACAGGCAGATGTGCGCGTGGATCTTTCATTTGGCGGAATAAAGGCC
CACTGCGGTTCCTGTTGCATGTATTTTTCTGATGACACTCATTCCTTGCTGGGTCATTGCCAAC
ATTCCTGTAAGGAGAAAGAACATGTTCAGGTATCAGGGAACCACTTAAGAACTTGTGGGACCCA
CTATTGACCAAATTTGATGGTACAGAGGCACTTCTTTCCAAACTTTCACCATTACAGTTGGCAC
TTTTATGATTCTCAATTTGTTGGAACTGCTGCATAGGTGATGTAGATTCCATATTTGGTTGCTC
CCTCAAATCAGTAGCAGTAGGGGGATCATCATCCCCACAAACATCAAAGCAAGAT
						
					

						Genomic sequence
						
							CTTTTGAGCAATACTATCTGATGTAACCTGAAAACGCCCCCTTCGCTGGATAACTTTTCCTTCG
GATTGCTCCTCAGGTTCAACTGCTCTCAAAAACAGTCATAACAAGCCAAATTACATCAATGACA
AATAAAAGAGACAGGTTTAAAGCTTTTTCTTGCTATTCTAAAAAAAGAAAAACTGTAACGTGTT
AGTTGATAGAGTTCATGATTATCTTACCAGGCAGATGTGCGCGTGGATCTTTCATTTGGCGGAA
TAAAGGCCCACTGCGGTTCCTGTTGCATGTATTTTTCTGATGACACTCATTCCTAAATCAGAAA
AGAAGCAAAAAAAAAATAGCATGTGTTACACCGACTAGAATATTAGACAATATGGGATATGTTA
GTACGATATGATAAGAAGCAAAATGAGAGTGAAATATTAAGACTACAGTAGGAGGCCACGAAAA
AGAACCAAAGGTTTTTTTTACAAGTGTTACTTTTGTCAAATATGTACATGTAAATCCATGCTTC
ATTCTTTCTTTTTTTTTTTTGGTTCTATCATGTTTTCTAGGTCCAATCTAAATTCCCATAGTAG
TTTTTTTAGCCTATTCAGCATATCATAAACATGATTTTACAGGGCAAAGAGTACTTTGCCTATA
CAAATTGAATTGAGATTGTCGCATAGCTATCTAAAATGCACAATACAATATAAATCTTCTCACA
ATAATGACCAATTTCAATAGTTTGACTTCACTAGCATAAAAAAAAATGCATGCTAAGATCCCAC
ATTTTTCATGCAGGTATTTCAAAATTTGAAGTGAACACTACAGTTCTCATATGGGCGAAGTAAA
ATCCATGTGTATAGAACTGATCCTTTTCGTTTCCGCCTAGCAGGATTACCATCCCCAATCTCGA
CAAGACCTAGTTTGGCCATGTGTAGCATGATGAAGGATCGCAATGCAAACCAGGCAGAATGACA
GGGACAAAGTTGTGGCACAAGGTGAGCACAGTATCATAGGCACTAGGCACAAGCTTTTGAAACT
GTACCTGACAACTCGTTTAATCTTAAATAAAAAGAACCACAGCTTGGTCCATCTTGTTTTCTAT
AAACATTGATTTATCAAGGAATCAAAGAAAAAAATACTAGACTGTCAACTGCAGAACACAGAGA
ATTAACCCTTGAATTCATGCAACCACCCACACACTTGATACACACACAGAGAGAGCTGGTCCAC
ACAAACTGAGCTAGTTTAACACTGTTTCAGTTCTAGGCGCTAAATAATCTATCAAATCATTTTA
AAATATATTTTTGAACTGAACAAAGCTTAATGCAAATAATCACTTGGATAATCAAGTTTGCTAA
CCACCAACAAAACTGTAAGCTGGTCAGCTGACTAGTTCACGTGATGACCTGATTTGGAAAAAAG
AAAGCATGTGATGCAGTGGAACTTGTCCTCCTGTGGCAGCGGATCAAGTGAGCACATTGACAGA
GGAATGAGATGACTCATGAGCTAGGCAAGCTCAGCGCTCAGCTAGGTGCTGCAGCAGAGCCTGC
TGTATGCCACTGCAAATGGTTGCATCATCTAAGAGTTTGCATCAACGAAATAGAGTGGTCATTG
TGCTTGGTTGGTAACTAGCAATGACTTGATTCAAAAAAAAATCTGTTCACTTTAAGGCATGTTT
ATATGTTCTCTTTGTAGGAGTGGGGTGGGGGGATTATCGAACTTAAACTAAGTTAAGCACATAC
TTCAGACTTGAGATGAAAACACAATCATAAGTTATCTGTTCAACAATAAATAAAGAAAACAAAG
GAAATTAATTCACCTTGCTGGGTCATTGCCAACATTCCTGTAAGGAGAAAGAACATGTTCAGGT
ATCAGGGAACCACTTAAGAACTTGTGGGACCCACTATTGACCAAATTTGATGGTACAGAGGCAC
TTCTTTCCAAACTTTCACCATTACAGTTGGCACTTTTATGATTCTCAATTTGTTGGAACTGCTG
CATAGGTGATGTAGATTCCATATTTGGTTGCTCCCTCAAATCAGTAGCAGTAGGGGGATCATCA
TCCCCACAAACATCAAAGCAAGAT
						
					

			
		

Sequences
Splice junction sequence	TTGGAACTGCTGCATAGGTGATGTAGATTCCATATTTGGTTGCTCCCTCAAATCAGTAGCAGTA GGGGGATCATCATCCCCACAAACATCAAAGCAAGATcttttgagcaatactatctgatgtaacc tgaaaacgcccccttcgctggataacttttccttcggattgctcctcaggttcaactgctctca aaaacagt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 439 Transcript exons: 16606755-16606837,16606974-16607062,16608560-16608826 CTTTTGAGCAATACTATCTGATGTAACCTGAAAACGCCCCCTTCGCTGGATAACTTTTCCTTCG GATTGCTCCTCAGGTTCAACAGGCAGATGTGCGCGTGGATCTTTCATTTGGCGGAATAAAGGCC CACTGCGGTTCCTGTTGCATGTATTTTTCTGATGACACTCATTCCTTGCTGGGTCATTGCCAAC ATTCCTGTAAGGAGAAAGAACATGTTCAGGTATCAGGGAACCACTTAAGAACTTGTGGGACCCA CTATTGACCAAATTTGATGGTACAGAGGCACTTCTTTCCAAACTTTCACCATTACAGTTGGCAC TTTTATGATTCTCAATTTGTTGGAACTGCTGCATAGGTGATGTAGATTCCATATTTGGTTGCTC CCTCAAATCAGTAGCAGTAGGGGGATCATCATCCCCACAAACATCAAAGCAAGAT
Genomic sequence	CTTTTGAGCAATACTATCTGATGTAACCTGAAAACGCCCCCTTCGCTGGATAACTTTTCCTTCG GATTGCTCCTCAGGTTCAACTGCTCTCAAAAACAGTCATAACAAGCCAAATTACATCAATGACA AATAAAAGAGACAGGTTTAAAGCTTTTTCTTGCTATTCTAAAAAAAGAAAAACTGTAACGTGTT AGTTGATAGAGTTCATGATTATCTTACCAGGCAGATGTGCGCGTGGATCTTTCATTTGGCGGAA TAAAGGCCCACTGCGGTTCCTGTTGCATGTATTTTTCTGATGACACTCATTCCTAAATCAGAAA AGAAGCAAAAAAAAAATAGCATGTGTTACACCGACTAGAATATTAGACAATATGGGATATGTTA GTACGATATGATAAGAAGCAAAATGAGAGTGAAATATTAAGACTACAGTAGGAGGCCACGAAAA AGAACCAAAGGTTTTTTTTACAAGTGTTACTTTTGTCAAATATGTACATGTAAATCCATGCTTC ATTCTTTCTTTTTTTTTTTTGGTTCTATCATGTTTTCTAGGTCCAATCTAAATTCCCATAGTAG TTTTTTTAGCCTATTCAGCATATCATAAACATGATTTTACAGGGCAAAGAGTACTTTGCCTATA CAAATTGAATTGAGATTGTCGCATAGCTATCTAAAATGCACAATACAATATAAATCTTCTCACA ATAATGACCAATTTCAATAGTTTGACTTCACTAGCATAAAAAAAAATGCATGCTAAGATCCCAC ATTTTTCATGCAGGTATTTCAAAATTTGAAGTGAACACTACAGTTCTCATATGGGCGAAGTAAA ATCCATGTGTATAGAACTGATCCTTTTCGTTTCCGCCTAGCAGGATTACCATCCCCAATCTCGA CAAGACCTAGTTTGGCCATGTGTAGCATGATGAAGGATCGCAATGCAAACCAGGCAGAATGACA GGGACAAAGTTGTGGCACAAGGTGAGCACAGTATCATAGGCACTAGGCACAAGCTTTTGAAACT GTACCTGACAACTCGTTTAATCTTAAATAAAAAGAACCACAGCTTGGTCCATCTTGTTTTCTAT AAACATTGATTTATCAAGGAATCAAAGAAAAAAATACTAGACTGTCAACTGCAGAACACAGAGA ATTAACCCTTGAATTCATGCAACCACCCACACACTTGATACACACACAGAGAGAGCTGGTCCAC ACAAACTGAGCTAGTTTAACACTGTTTCAGTTCTAGGCGCTAAATAATCTATCAAATCATTTTA AAATATATTTTTGAACTGAACAAAGCTTAATGCAAATAATCACTTGGATAATCAAGTTTGCTAA CCACCAACAAAACTGTAAGCTGGTCAGCTGACTAGTTCACGTGATGACCTGATTTGGAAAAAAG AAAGCATGTGATGCAGTGGAACTTGTCCTCCTGTGGCAGCGGATCAAGTGAGCACATTGACAGA GGAATGAGATGACTCATGAGCTAGGCAAGCTCAGCGCTCAGCTAGGTGCTGCAGCAGAGCCTGC TGTATGCCACTGCAAATGGTTGCATCATCTAAGAGTTTGCATCAACGAAATAGAGTGGTCATTG TGCTTGGTTGGTAACTAGCAATGACTTGATTCAAAAAAAAATCTGTTCACTTTAAGGCATGTTT ATATGTTCTCTTTGTAGGAGTGGGGTGGGGGGATTATCGAACTTAAACTAAGTTAAGCACATAC TTCAGACTTGAGATGAAAACACAATCATAAGTTATCTGTTCAACAATAAATAAAGAAAACAAAG GAAATTAATTCACCTTGCTGGGTCATTGCCAACATTCCTGTAAGGAGAAAGAACATGTTCAGGT ATCAGGGAACCACTTAAGAACTTGTGGGACCCACTATTGACCAAATTTGATGGTACAGAGGCAC TTCTTTCCAAACTTTCACCATTACAGTTGGCACTTTTATGATTCTCAATTTGTTGGAACTGCTG CATAGGTGATGTAGATTCCATATTTGGTTGCTCCCTCAAATCAGTAGCAGTAGGGGGATCATCA TCCCCACAAACATCAAAGCAAGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006750* osi_circ_016204 						
					
						PMCS
						0.207959226

Conservation Information
Conserved circRNAs	osi_circ_006750* osi_circ_016204
PMCS	0.207959226

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16608761-16608817(-)
						
						Potential amino acid sequence
						
							MESTSPMQQFQQIENHKSANCNGESLERSASVPSNLVNSGSHKFLSGSLIPEHVLSPYRNVGND
PARNECHQKNTCNRNRSGPLFRQMKDPRAHLPVEPEEQSEGKVIQRRGRFQVTSDSIAQKILL*
(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16608761-16608817(-)
Potential amino acid sequence	MESTSPMQQFQQIENHKSANCNGESLERSASVPSNLVNSGSHKFLSGSLIPEHVLSPYRNVGND PARNECHQKNTCNRNRSGPLFRQMKDPRAHLPVEPEEQSEGKVIQRRGRFQVTSDSIAQKILL* (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0486400_circ_g.12

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