Detail information of POPTR_0014s14450_circ_ag.1


General Information
CircRNA Name POPTR_0014s14450_circ_ag.1
ID in PlantcircBase pop_circ_003549
Alias Chr14:11265968-11270811
Organism Populus trichocarpa
Position chr14: 10589336-10594179  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0014s14460_circ_g.1
Support reads NA
Tissues stem xylem
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCGACGAAATCGACCATTTCTGCCTCTTCCGCCATGTAATTCATATCCCCCAACCGCTGGA
AGTAGGACATGTGCTATTTATGCATATATATAACGTcttcccactctgtgaatccaccagcaat
ccgtccaagttatctccgacaactgtcatcagcctactgtctggactcattgatgtgtgctgca
ataaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCCACTCTGTGAATCCACCAGCAATCCGTCCAAGTTATCTCCGACAACTGTCATCAGCCTA
CTGTCTGGACTCATTGATGTGTGCTGCAATAAAAACAAGTTTAGTCATCAAATTGGAAGCTGGG
AAAGTCATGGCAGCTATAGAGTTCCACAACAGATGATGACTAGAGATTGAAGAGTCAAGGACCT
TAAAGATGCTTCAAAAACCTGCTTTGTGCAGGTGATTAACACCCAGTTTGGAACAAAACAAGTT
GAATTTGGATTTGTTGATCCCAATTCATGAGTTGGAAACCAAAATTAGTTAGGAGAAATGAATT
GAAATTACAACTCAAATGGATCGGTAGAGCCGAGACCGAGACTTATTTTGGTAAGATTTGTCAA
TTCCTATTTTATCATGCTAGCTTTAACTCAATTATGCTTTTGTTCTTCCAAATAGTTTTGAATA
GAAAATCCATTTGCAATCAATTCTATCAATTCATTTATAAACTGCTCCAAATAGACTTCTAACA
CATTTTGGTTGTTTAATTTCTTTTTTCCTTCTACAGTTATTGTAGTGGCATCTTCCATCTATTT
TATGCATATGAAAAGAAATTGATGGAGAAAACACAATTCCCAGTTAGCAGTTCCCCTATATGTG
TTGTTCCTTTCTAACAGTGAGATTCATGTAGCAGTCATACAGAAAGTTGGGACAGAAACAAAAA
AAATCAACCACGAAATGCATATTAGTGTTTCTTGTAAGTGATGAGGATAGCTTACATTCACCGG
CCAAGGGAAACGGAAGTGATTCAAAAGCTGAAACGTCTCCAAGTCATATTCTCTAAGACCACAA
TCATTGTTGGATGCCATGAATTTGATTCCACCCCTGCAAGAACAGATCCCATATCAATCTGTAA
TGGCTAAAAACAGTTTATGATACTGAGCAAATACAAAATAATCTTACTACCTCATGCCATCATA
TATCTCAATAGCATTCGTGATGGCATTATCATCGTATGTTGTGCGGGTACAAAAGCTAACTCCT
TGCTTATCCAAACGCTGCAGCAGATAAATTAACAGGTTAGAAAAAGACTTCCAGAAAAGATGCA
TGAGCAGCCTATTGGTCTTTCCATAATTTTGATTGTATCTTATTTTATTTTTCCTGTTTGCAGG
AGCAGCAGATGTTTGAAACCCAGGAAAAGTAGAGCTAAAATCATATTATGTTAGCTTTCCAAAA
CCTTGGCTCATAAAATACAATGTTAACAATTTCAGCAGTTCATCAAATGAACGAACATGAAATG
AAAATCTAAAAGATGTGGCAGAAGGAAGTAAATATCCATGCCTGTTGCAAACATGCAGCATGTA
CCAGGCCCTGCTGATTAGGTATTGAACATGTGATAAACAAGAGGGATACATAATTATCCACATG
AACATGGCCATGGCCTGCTACTGACATCAAACTTCATCAGTCTCAATTCATTCTTTTCTTTTCT
TTCATGAAAAAGAAGACTTCATTGAAGAAGGAAAAAAACTTTTTTTTCATACCAGGTGAATGGT
TAAAACTCAATTTCAATTAACTAATAAACATTTACCATGAAACTTGTCCGTGATTTTATTTGTC
TTATTACAACTAATTATTGGCGACAGATAAAAAAATGCAATTTTTTGTCTTCACAAAGGCTTCA
ATGCAAATACAGCACTCCCACTTCTAAACACGTTTCATATTTTTAAGGAAAATGACAATGTTTT
CACAACCATACATCTGACAGGACTTATATCCTGACCGATACAACATGTAGGTCGCTTGTGGCAG
CTAACATCAGAGGCTCCAAATCCAAGGACTATGGAATCCCGTGGAGGCGTGCAGAGCATGCTTC
TTTCTTCTTTTTTTATCCTAAACTGTGCATATTTCCATTTCAGGATCCTATATCATGGTCCAAT
TTCATATTCGAAACATGGGTTTCAAATGTTCCCCCTAAATGCTACGCGGCAACATTGAGGACAT
GATCTTTTAATTCTTATGTCTAAAATCTGAAGTATGAAATGAAATGAAGGGCAAAGACAAAGTT
GACACAAAGCAAATGTGTTTAAAAGCATTTATTGAACCCTCCAAACACTCAGCATTCGCCAAAG
GAAAAATAAAAAGAATGCTTGCAACAAGCTTTCTATTTCCTGTTCCCCGATAGCTTATCTTCTA
ATTCACATCCATCCTCACTTCATGTTTCACACCAGTACAGCACAATCCTGCAGCTTTGCAAGAT
GCAAATGTAGAAACTGAGTCAAGTCACCACAACACAGAACCTGTAATTAATATTTAACCATATA
GATCTAACTTACTGATGTTTTGCCTAATTCTCTTCATATGGAAAAACAAAACAATCTCATATAG
ATCTTCCCACCAATTGCATCCAAATCGATGTGCATATTCCAATAATCCCTTCCATATTTCTCTT
TCTCAACTTAATAATTCTTATCCTCCTATTGCCTCTTTGTTCACTACACTACTTGATCTCAGGC
TACAGTAATGCCTTTGCAACCTCAAATTAACTCTTGTATGACAAGTTATGCAAATAATCAAATT
GTTTGTGACCCATAAAAGCCTTTGTTCAACTGGCTCCCTGAAAATTCTACCAGCCAGATTCTTC
ACTTTGATACCGTATTATGTTATTAGCCTCAAAACTTGATCTTTCCAATTCCTATTCAGCTCAG
AACCTCTAAACCTTTTATCAACAATAACCATAACCTCCGATAACTGCCTACACATATAAAATCA
ACGCTGACCACATGTATGTTCTCAGTCATGCAGCATTAGAAATGGAAACCGTTCCGCAGTACAA
GATGGAGGACAACAGAAAGTCACTCATGATGCAATCTTCATTAGGACAACGTCATCAGAACAGT
CTTTATAAAAAGTAGAACTGCAATTTATCAATTTCATCAACTTCCTAATGCTGCTAAATAGCAG
GCAAAGGAGCAGAACAACGCCTTGTTCACTCAAGTAACATTTCAAAATACTTCACAAACACTCA
ATTGTATTAAAATGGTAATATCATAAGCACATTAGCTCAACTCAGAGTGAAAAGGTAAAAAGAA
AAAGAAAATGCTTTAGATATAAAGCATAAAAGACCTATCATCAAGCTCATTCTGAATGGTTAAA
ATTAGAAATGCCACTGCAGATTTGAAAATAGGCTAATGGCATTTCCTACTGTTAAATTCTAGTA
AGAGCACAGCCACCCTCAAAATGCCTGCAAAGAATCTTCTAAATGATAGTACAATTTATTTATT
TGAAGCACTGTGTCTTGTATGGTAATCCAACACATGAGGTCAAGAACAGGGCTCAAAATAAAAT
AAGACTACAAAAAACCTTACCACTTTATATAAGCTAACAAATGAAGAAAGAGTTGCTGAGATAT
CAACTCACTTTGCAAGTAAGCTCTCCTTGGAAGCCTCCAGCAACAAGAAAATTATCTTTGACTG
CTATGGTGCTAATTTGAGTCTGGGTGAAACCTTCTAACAAACTTCCAGCATGTTTCTGTATTAC
AAACAATTATGAGTTGGGGAGGGGGAAACCAGAATGGTAAATATGAACTTGGCTGATAAGGAAC
TTTTCTTGAGAAACACGAGAGAGATAGATAGATATATAGAGAGAGAGAGAGAGAGATTAATCAT
ACTTGACAAACAGATTTGTTATTAACTGTGAGAGTCAACATGGAAATAATCATAATACCTCAGA
CGGTGCTACATGTCCTGCAAAATTGATGACCTCGGACAAATTGCCAGATATGGATGACCAGTGC
ATGACTGAATAATTCGACACCAGATATACATCATGTTTCGAAGTGGCCCAAACCAAGTTCCTGA
GCTGCACAACCATAGCACAACAAAAGGCTCTGAAGTGTTCAGTGGGCAATATAACTAGCAAAGG
TCGATGAAGTCAGCTAACATGCAATACGGCTTTAAAGGAAACTTGCTACTATGTGCAGTCCAAA
GAGAAAAAACAACACAAAGTTGCCACTTATAAATACAGAAACAAATTGTTCTAAGAATAACACA
CTAACATTTAAGGATAGAAGTCCTAAAACTAAATAGATAGCTACCAACATTTAATCAGAGCAAG
TTTCTTTTCTCTTTCCCTATTTCAGAAGGATGTCAAGACAGCTCAAACACAAACACAAATGACG
AGGTTTTTACAGAAACATAGAAGAATCTGCTATTCACATACAGAAGTTGCAAAATCCACAAACC
TGAAAATGAAGTATAGTGGGCTTAACCGATCTAGTATTATGGAAGAATTCATAGTAGTGGCCTC
CCTTCTCCATTTGTTTGCACTCCTAAAACAACCAAGTACAATAATCACAAAGAATTATGACACC
CGGAAAACAAGTTAATAACAAATAATATTAAGAGTATTAAAGTACCTTATCGACAGCTTCGCCG
GATAATGGAATGTTCTCATAATTCTTGTACTGCTCAAGCCTGGTCAATCTGTATTTTTCCCTGG
TTATATTCAATCTTTCCCAGGGAATACCCTGTATGTCTTGCCCATTCCTGGCCTGCCCAGAAGA
TGTATCCGTAGCCTTGGTAAGCTGCTCATTTTTAACCAAGAATTCCAGATTAATTAATTTTGTA
AATTCTACCTGAAATAAAATACTCATCCATAAAAAAAACATATACCAAAACTACCAAAAAATAA
GTTGAGAAGAATACCAAGTCGTATTCATTGGCTTCAACATCTTCCACACCGGCGGCGGCTCCTC
CATCAATTTCATCGACGAAATCGACCATTTCTGCCTCTTCCGCCATGTAATTCATATCCCCCAA
CCGCTGGAAGTAGGACATGTGCTATTTATGCATATATATAACGT
Conservation Information
Conserved circRNAs NA
PMCS 0.096609701
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021