Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011719_circ_g.1 |
ID in PlantcircBase | zma_circ_009763 |
Alias | zma_circ_0002880 |
Organism | Zea mays |
Position | chr8: 159825466-159827279 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d011719 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011719_T005:4 Zm00001d011719_T004:4 Zm00001d011719_T008:4 Zm00001d011719_T002:4 Zm00001d011719_T007:4 Zm00001d011719_T006:4 Zm00001d011719_T003:4 Zm00001d011719_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.10796685 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
159827218-159825597(+) 159827220-159827252(-) |
Potential amino acid sequence |
MVMAGSQVCLCLLAIRNSRSSLIIHHYVSSSLSSGRFIMFSPVQTRGIEAFPPTKTARVQILGP F*(+) MEMRLFIALQCVQCATMQVKQQKKSSNKWVCVVCNQRQSVLHVHARGYRAADLRRFVQDTNLAR GRREFAPLAEPDVDRDLAAVEEGDVFPIEKSQTEWSEYLDDPGETGKGCGGLGADASDGESDEG IEVITELPQKRPKVRPRKAQSDVVGKRTKLSTHPTLCNKRQQIKQGSNPHCATTTAEAQGSKWT KYLDTSRFGGRKCFDTSGLHWTEHDESATTEATTDVVVDDETTPAVSYCQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |