Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024036_circ_g.3 |
ID in PlantcircBase | zma_circ_010194 |
Alias | Zm10circ00020, GRMZM2G095323_C1 |
Organism | Zea mays |
Position | chr10: 38802073-38804476 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d024036 |
Parent gene annotation |
C2H2-like zinc finger protein |
Parent gene strand | + |
Alternative splicing | Zm00001d024036_circ_g.1 Zm00001d024036_circ_g.2 Zm00001d024036_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024036_T004:5 Zm00001d024036_T008:4 Zm00001d024036_T001:5 Zm00001d024036_T005:5 Zm00001d024036_T006:4 Zm00001d024036_T009:2 Zm00001d024036_T002:4 Zm00001d024036_T010:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.160896079 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
38802251-38802099(+) 38802276-38802099(+) 38802111-38804234(-) |
Potential amino acid sequence |
MPFVEKEKYELPSKCRLRPDNDMFREQEQHKIHFDINEWHCGFCKKAFRAEKFIDQHFENRHKN LVDNSLADSCFPINQGLAASRLHEFFLRQFCDAHTCSKGTKPFPKGGRNSSNKSRRT*(+) MNSQANVDFVLIMTCFGSKSNIRFILILMSGTVAFARKLSEQRSSLISILKIATRILWIIALQT VAFLLIKVLLPAVFMNFSCASFVMLTLAVREQNLSPKVAGILQTNPDAHEVHCSRERSRAAWEA IDEYLMPFVEKEKYELPSKCRLRPDNDMFREQEQHKIHFDINEWHCGFCKKAFRAEKFIDQHFE NRHKNLVDNSLADSCFPINQGLAASRLHEFFLRQFCDAHTCSKGTKPFPKGGRNSSNKSRRT*( +) MHLMCVWICLKNSCHLWGKVLFPYCKCEHHKTGARKIHEDGWQQDLD*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |