Detail information of AT5G21990_circ_g.8


General Information
CircRNA Name AT5G21990_circ_g.8
ID in PlantcircBase ath_circ_039698
Alias At_ciR4744
Organism Arabidpsis thaliana
Position chr5: 7274655-7274897  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT5G21990
Parent gene annotation TPR7
Parent gene strand +
Alternative splicing AT5G21990_circ_g.1 AT5G21990_circ_g.2 AT5G21990_circ_g.3 AT5G21990_circ_g.4 AT5G21990_circ_g.5 AT5G21990_circ_g.6 AT5G21990_circ_g.7 AT5G21990_circ_g.9 AT5G21990_circ_g.10 AT5G21990_circ_g.11
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G21990.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATTGAAAAAATAACTTTTGACTTGAAGTATTATCTTTTCTGATGCAGAGATGTTAAGGAAA
GATTGGCTGTCGAGGGACCTGGCAAGGCATCAAGAGgatgccgtctctgatctaagcaaggccc
atgaagtttccccagaagatgagacaattgccgatgtgttaaggtatggatttttatattcatt
actggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGCCGTCTCTGATCTAAGCAAGGCCCATGAAGTTTCCCCAGAAGATGAGACAATTGCCGATG
TGTTAAGGTATGGATTTTTATATTCATTACTGGTAATGTCATACTTTTCAGTTCTGCTTATCTC
AGAGGTTTTGATATTAACATTGAAAAAATAACTTTTGACTTGAAGTATTATCTTTTCTGATGCA
GAGATGTTAAGGAAAGATTGGCTGTCGAGGGACCTGGCAAGGCATCAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.18582421
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015