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circRNA ID
Zm00001d026079_circ_g.1
Alias
zma_circ_006432, Zm10circ00059
Organism
Zea mays
Position
chr10: 137926586-137928987  JBrowse»
Reference genome
AGPv4.38
Type  
ei-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d026079
Parent gene annotation
Probable methyltransferase PMT15
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
TGTCACAGCAGAACTGTAGTTTGCTGCTGTTCTCTATCTATTTTAGCGAAAAAAAATGTCCTGC
CACAATGTAATAGCCTTACGGTTATGCTTTATGTAAgggctaccgcaacccgttcccctggccg
gccagccgcgacgtcgcctggttcgccaacgtgccccacaaggagctcagcgtcgagaaggcgg
tgcagaac
Support reads
NA
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
AC-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GGGCTACCGCAACCCGTTCCCCTGGCCGGCCAGCCGCGACGTCGCCTGGTTCGCCAACGTGCCC
CACAAGGAGCTCAGCGTCGAGAAGGCGGTGCAGAACTGGATCCGCGTCGACGGCGACAGGTTCC
GCTTCCCCGGGGGCGGCACCATGTTCCCTCGCGGCGCCGGCGCTTACATCGACGACATCGCCAA
GCTTATCCCCCTCCACGACGGATCCATCCGCACCGCGCTTGACACCGGCTGCGGGGTAAGCCAC
TTCGATCGCAATCGTACACGAACGCGCACTCCATTTTTCGTGAAATGATGATCACGTGCACGCA
ACAATGCCTTGTCAAGGCCTGCACAAATTCGAGGTCAATTTCAGTCAGAGTTTGGAGAACAGCA
ATCGGAGATCTCGGGAATGGCGTTGGCTAGCTTTGCGGGTGTCGGAAGTTTCCAATCCCTTCTC
CGCTTGTCGGGTCAGAGGGTTTTTGTGTCTGTGAACGGGTCTCACCCAGGTAAACCTCGTGCCT
GACCCGATAAGAGAGCATCGAATCCCTTCACTTGGCAACGGCGGTCAAGCCGCAGTGAACTGTC
ACACGCTGTTTCCACTGACAGACCAGACCAAGCCGGATCACTGCTGAAGCGTATAGTAGATCTG
AAATCTCTGCAATAATAAATTAATAATGCTGCTGCCAACTATGGTTGATATCTACGTGCTTGTC
TTTTTCTATGCAGCTGTATCGAGAACGTACCACTAATCCATCAGAACGTTTTCAGCCATATATT
TGCAATCGCGATATCATCGAATTCTTGATTGGAAGTTAGGAAGGTGTATCTGTTGTTTATGCCG
CTGGCTGTGGCGTCGTTGTAATGGGTCCCCTCTTACAGCTGTGACTGTTGCCAGCTTGACCTTG
GCATTTTGATCTGATTGTTCGATGCATAGGACCTGCAGTAATAGCGATTTTTTCCCATTGTGGT
GCTCCTTGATTTGGGAACTAAACCTGTGTGGTAACTGATGATCAGGTTCATTTTGCTGCTTTGT
ACAGGTGGCGAGCTGGGGGGCCTACTTGCTGTCACGCGACATTCTTGCCATGTCCTTCGCCCCG
CGAGACTCCCACGAGGCGCAGGTTCAGTTTGCACTAGAGCGTGGTGTGCCGGCGATGATTGGTG
TCCTCGCCTCCAATCGGCTCACCTATCCGGCACGTTCCTTTGACATGGCGCACTGCTCTCGTTG
CCTCATCCCGTGGCAACTTTACGGTATGTTGAATTTGTATCGCCCCCAATGCTACAAGGGATCA
TTATCTTCAGCTGATTACCCCGTCGCTTCATGGTCCGATGTACGTGCAGATGGCCTGTACTTGA
TAGAGGTTGATCGTATCCTGCGGCCTGGAGGCTATTGGATTTTGTCTGGGCCACCAATCAACTG
GAAGAAACACTGGAAGGGGTGGGACAGGACTAAAGAAGACCTGGATGCAGAGCAGAAAGCCATT
GAGGCAGTTGCCAGGAGCCTCTGCTGGAAGAAGATCAAGGAGGCGGGCGACATTGCTATCTGGC
AGAAGCCTACTAACCACATTCATTGCAAGGCCATCCACAAAGTTAGCAAGTCCATACCCTTCTG
CTCTAACCAAAACCCAGATGCTGCCTGGTACGAACAGCACCATGCTAGCCATTTTCAGTTGAAG
TCATGGTACTCTATGGTAAATCACTAACCATGTTCGTGTGATTAATTTTAGGTATGACAAGATG
GAGGCTTGTATAACTCGACTCCCAGAGGTCAGTGACTTAAAGGAGGTTGCCGGCGGTGCGTTGA
AGAAATGGCCCGAGAGGCTCACTGCAGTGCCACCCAGAATTGCCAGTGGCAGCATCGAGGGGGT
CACGGAAGAGATGTTTGTGGAAGATACTGAGTTATGGAAGAAGAGAGTTGGGCACTACAAGTCC
GTGATTGCGCAACTTGGTCAGAAAGGCCGGTACCGCAACCTACTCGATATGAATGCAAAGTTTG
GCGGCTTCGCTGCGGCATTGGTGAATGATCCCTTGTGGGTCATGAACATGGTCCCTACTGTGGG
GAACTCAACAACCCTTGGGGCAATATACGAGCGGGGCCTCATTGGAAGCTACCAGGACTGGTAC
GTAGTCGTACTGCAAACATGGCTCCTCCGTGGTAGACGGTTATATATTCGTCCGTGCCTGATCA
GAAGTCTCCATAATTCACTGCAGGTGTGAGGGCATGTCCACTTATCCCCGGACCTACGACCTCA
TTCATGCGGATTCACTGTTTACACTGTACAATGGCAGGTAAAAACATATTTACGATCCAGTCTG
TCACAGCAGAACTGTAGTTTGCTGCTGTTCTCTATCTATTTTAGCGAAAAAAAATGTCCTGCCA
CAATGTAATAGCCTTACGGTTATGCTTTATGTAA
Number of exons covered
Zm00001d026079_T002:3
Zm00001d026079_T001:5
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
137928604-137926923(+)
Potential amino acid sequence
MLYVRATATRSPGRPAATSPGSPTCPTRSSASRRRCRTGSASTATGSASPGAAPCSLAAPALTS
TTSPSLSPSTTDPSAPRLTPAAG*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Han et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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