Detail information of BGIOSGA013998_circ_g.2


General Information
CircRNA Name BGIOSGA013998_circ_g.2
ID in PlantcircBase osi_circ_013920
Alias Chr03:39276439_39277975(MH63RS2), Chr03:39121216_39122752(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 40787492-40789028  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2
Parent gene BGIOSGA013998
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA013998-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAAGAGCCACACATCAGGTACAATGGATTCTG
ATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGggaagaggaacagattaaacggctggaa
aggcttaagcaagagaggcagaagaggattgctgcaagaagtagcacatctaattcaatatcaa
caccacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAGAGGATTGCTGCA
AGAAGTAGCACATCTAATTCAATATCAACACCACAGCAGGTCAAAGTGAAACCTTCACCAAAGA
CTTCTCCCAGTACCTACAAGAGTTCAAAGTTTAGTGATGCTGAACCAGGATCCTTTTCACCTCT
AAGAAAGCTTCCTGCTAGAACTACTGCAGAGAGTGACCATCAGAAAACAGGAAAAGCTAGCAAA
CTAAGCGATAGTAGTACAAATGCAGTGAGTAAATCAACCTCATCATTGGCAGCGATGAAGAAAG
AGAAAAATGGGAGAAATGAATTGTCCAGTGAGAGATTGAAGAAACTTGCTGAACCTAAAAGTAA
TGCTTTGACCGACCGTCCTTCAAATTCAAAGTCTGCTAGCATGGACCATTCACGAAGGAAAAGC
ATGCCAGAAGATACCCAAACAAAGAAAATATCTGCTATAATGCAGCTCGACCAGAGGAAATCAG
CAACTCTACCAGAACTCAAAGTCAAATCTCCACGAGCTCCCTCTATATCTGTGAAAAATAAGAC
AATTGCTAGAGAAATAAGGGATGGGGATCCTGGAGGTAAATCACCTCCCACTTTAGAAGTTACA
GATGGAAAGAAAGCTGATGTAGAAGTCTCCAGGATAAGCAACAGTGATGATAACGTGGTGGTTG
AGAAGACTGTTGTGATTCTTGAAAATGAGGTGGTTTCAACACCTCCTCTCATTCTACCTCCTGG
AAGAACATCAGAGAATGAAACTTCTAGCAATGACAGAACACAGAAGCCCAGTATGGAATTGGAG
TACACTGCCATCAGGGCTCCACCTTCTCCAGCTGTTCTTCCTGAAGCTGAGAACCCCACCATCC
ATAGACACAATGACCAGGGTAATTACGAGGTATGATGCTTATCTTCTTCTCAGTTGTTTACTTA
AGGCTTCCGCTTATCTTCTTCTCAGTTGTTTACTTAAGGCTTCCGCTTATCTTCTCAGTTGTTT
ACTTAAGGCTTCCCTAAAAGGTTATCTGTTTTTTTTTCTGTTTCTTTGCACAAATAAGGTGTTT
ATGAAGACTTCAACTAGAATGCAACAGTTACTTTTGTTCTATTAAATTCCACAAGTTGAAGTGA
TAAAAGAATGCTTGTGATGACTAGGTGATGACGGAGCATCTGAAGGATGAGACTGAGGAATTGA
CCTTGTCTGCTGTGGAGAAACCCTACCAGGCCCCTTTTGCTAGGGTGACATCGTTGGAGAATGA
TTCAGCCACCATTCATGCTTACCCCCATGCACTACCAGTTGAATCTGAAACACCTGTGCATGCC
GAGAGCATTAGGGCTCGAGTACTAGACCCAGTATCGACAGTTTCAGTGGAGGAGACCCCTGAAG
CAAATGAAAAACCTCGTAATAAGGAATCAAAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAA
GAGCCACACATCAGGTACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGAC
G
Conservation Information
Conserved circRNAs osa_circ_022838
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021