Detail information of LOC18040262_circ_g.1


General Information
CircRNA Name LOC18040262_circ_g.1
ID in PlantcircBase ptr_circ_000294
Alias circRNA296
Organism Poncirus trifoliata
Position chrNW_006262201.1: 14685036-14689438  JBrowse»
Reference genome Citrus_clementina_v1.0
Type   e-circRNA
Identification method CIRI
Parent gene LOC18040262
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues shoots
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered XM_024185029.1:10
XM_024185024.1:10
XM_024185027.1:10
XM_024185026.1:10
XM_024185025.1:10
XM_024185032.1:10
XM_024185030.1:10
XM_024185033.1:10
XM_024185028.1:10
XM_024185031.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTATCCTTCAGCTGGAAGGAACTCTGATTTTAAAGAGCCAATAAGTCAATTAGATTGGTCTTA
TCATGAGGATGCTAGGGATGATTTGAGTTTGCTAAGtaacttcatcaggctaccaagcagagac
catatccccaaagaagtgagtgttgggtttgtattttctatatgcatgctttcttatccctttc
gtatatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAACTTCATCAGGCTACCAAGCAGAGACCATATCCCCAAAGAAGTGAGTGTTGGGTTTGTATTT
TCTATATGCATGCTTTCTTATCCCTTTCGTATATGCTGATGTATTTGATTAATTTTTACAAGAG
GATGTTTTAACTTTAGGAGCTGATGTTTCTGTTGCCTCACAGTTTTAAATTTACTGCTTCTGAT
AGTCAGAACAACGCCTTCAATGAAAGCAGTTGTGATTCATATCTCAGGAAAACAACCAATATCC
AGCGTAAGTATCAAGTATTTACTATGTACAAATTCTCAACTCTCTTACTCTCTAGGCTTCTCCT
GCCGGGCTTTGACTGGCCATATTCCTTTCCAGAGCACTTTCATTAGTGGAGCTCCACTGGGTGG
ACTTCTACTATAATGCAGCTGTTCTTGTCATTGATGGTTATCATGAAAATGTGTCGATATTGTA
TTTTCTTCATTGTTACCTTGCAATCTTATTTCTCAGAGATATCTGTTTTTGATTTGCTTGCTGA
TGATGGACCAAGTGGCAATTTGGAGGCAAGTCCTGTCCATGAAGCTCATGTTGCATTTTCAGTA
GAAGGTATTAAATTGCTTCATTAGAAGTTGAAAGAATATTTCATTCTTGAACCCAAAATAACAT
TTTTTTTAGATGAAAAAAAATGAGTTTACCTTATCATTCAACTCGGTCTACTGACCATTTTGCA
CCAGTATTAAGAAGGTCACTGTTCCTCTGAAATCGTCTTCATAAGTAGAAGGAGCAATTGACAC
AGAGAAAACTGGATAAACTTTTAAATGGTTGAGAAATTAGTGAAGAGCAGTGGGAAATTAGCTA
TGAGACTGACCAGTCATTAAAACAATTGTAACTTCAGCTCTCTCACCACCTCATGTCTTTCACT
CCTCTCGTTAAATCTGTTGGCTCTCATGCATCCTACCATTTCAATCTTACGTAGTTACAGTTAT
TCATGTAGAGATTCTTTTTACCATGTGCTGAAAGAATTCAATGAGGTACTTTTTGGATGCCAAT
ATGATTGGCTTTATTTTCTGTTAAATTGATATCTGCCACTTAGCACACTTTTTTGCCCTTCAGG
TTTGGGCAAGGTGGGGACACAAACACCAATCCTCTCACCAGAACAATGCGAAAGGTAATAAGAC
ACATACATTTTTCTGTTAATTCAATCTATTTTTAAATTCTACTGAAAGTAGTTCTAACAATATA
TTTTCCACAAAAGAAAACTGACTTCAACACTTTCTTGATTTATGAAACCAAATTATGTTTGTAA
TCCTTTATTATATTTGGTTGCTTGTATTACACTCTATTAAGCTAATTGGATGTTTATCCAAGAA
AATTTAAGCACACGTTGAAAAGGAAAAATCCTATAAGCATTTTGAATTGCTTCACAATTGAGAA
ATAATTACTTGAGTTGATAACAAAAAATAGCATATGAAGTATGAAAATTTTGATATTTCCTGGT
GACATATTGTAATGGTGCTTAAAATATCTTTTCTGACAAATTTGGTTCGTGAGGTATTTTAAGT
TGTCCAAGGCAGATAGTTAGAGAATTATGTATTAGATTTTCAGTGGTTTATTTATTTATTTTAT
CCTTTTTCATTTTTGTAATGCAGCATGAACTTGTAACTGTGTGTTGGTACGTAGTTCTGCTATC
TTCTTAACTGAATGTCAATGGCACAAATATCCATTAGATCTGTATTAGATTTTAATCCAAGCTG
TCTCAGCATTTGGTTTTTAATTTTAATTTGTCATGAAATACATCCTTTCTCAATGCTGCATACG
TAACTTAAGCTTGATTTGAGTTTAATAGCTAAGTTGATGTTTTGTGATTAAACTAGAGACTTCA
GATATAAATGCATGGTTAAAGCACTATCTGAGCCAATGTCCTTGTACAAACATAGGATGTTTCA
GTATGTATGCTCTTCACCTCAAAAGGCTGCAAGGAGGCATAACTTGTTAAAGAACTTTGATTAT
GTGTGGGATGATCTTGAACTTGAAGTGGTGAGAAGCCCATGCACACTCTTCTTTTTTAAAGTTT
ATATAATACTTGATTGGTCTAATTTGAAGTATTTGATGTTTTTTGCCTATAATTTCCTTATTGA
ATGAGATCCATGCAAAATGATCACAACTTTCTGAAGTATTTTGAGTAGTTTAAGCCTGATTTGA
GTCCCTGAAATTGTGCATAGTCCTTTTTTGCTTATGTAATAAGTATGCAGAGGCATTGCAAAGC
CTTTGGCTGTGGGTAAATGATAGTGTGGGTTTTTTGCATGACATTATAAGTTTGGCTGGGGAAA
GTACAATGTAGTAGTTAGAAGAGACATATAGACTATGGATTTATGCATCTTTCCCTGAACAAAG
CTTACGGGATAAAGGATGTATAGGAGAATATTCTTACCATTAAGTTAAGGGGAAGTTCAAATAG
GAGTACAAGACAAATGATGAACCCTAGCTTCTTATTTATTTATTAACGGTCTTTCAAAAATATT
CTATTCTGTATATGGTTTCTGCAGCTTTCTATAGTACGATAGTATTCCTCTGTTGGATTATTGT
CTGATTGTCATCAACTGAATTTAATGTGTTGGTGGGCTGAGTAAACTTTATACTTATGTTCCTT
AAGTTACTTTAAGTGGAGACATGACACAATTGTTGTGATCCATTGAGTATAGGATGTCATGATG
CAAGATACGAATAAGCCCATGAGTGGCGGCTATTTGGAGTTTTCATCTGGCACAATAAATTCCC
GTAGTCACAGGAAACTGAAGTATTCTACAGTACAGGACTGTGAACCATTTGATGGCTGTGGTAG
TAAATTGCAGAACTCTTTTGGTGATTCTGAATTCTTCCATGGCGTTGGAAACAACAGTGAAGAT
CTATGGGACGGTATTTCAGTTTTTTCCCCATTCAAATTATCACTTTTCCCTTCCTATCATGATT
ATTATTGTTTCACTCTCGGAGAAACTTTTGGCATAATAAATTTTCATGTATCTTATGTGATATC
ATTGTGAGTCAAGATTATGTTGCATATTGTCTCATGCATATGCAAGCTCCTTTGCACCTGCTTT
CCCGTATGTTAAACAGTTAAATCTGAGGTGATTTTCTAGTTGAAAGGATCTGGTGTGGTCCTTT
AGATTTTGCTTAACTTGATAAAAAGTTAAAGTTGGTGAATATTTTGCTTAACTTTGTTTGTTAA
CTACTTAACTTCACGTGGCCATTTGTTGAAATGAGATTAATCATATTTCTAGTTTCGGCTTTTG
AGTGTTCTTTTGTATTCCTGTATTAGATCATGGGTCCTGGGCATAAACTTGAGGTTCTGTAATT
ATTTTCTGTTATTTGATTTCCTTCTTAGGATCAGGAGTGTAATAATAGAGTCTAATTATTTGTC
CTTTTTTTTTTCAGTACCGGCTAGGTCTAGCTTTGTAGATGACAATCTTCATATTGAGAATAGA
TTGAATGCGTCTGGGAGGAATTGGCAGAGTCAAAGTTATGGAAATGAGCTGTCAGATTCTGCTT
TTGAATTCCCTCATCTACATAAGAATAGGTATTCCACCAATATCAATGTACTCTGCCATATTTT
CTGTACTATCATGTGTAGGTTCCTAAGAATGTTCTTATAACCATGCAGGGTATTGGTGAAAGCA
GCAGACAGATACAATATCTTAGGTTCTGCTATCAACGTCACTTTTTTCTTATTATTCAAATATC
AATGTAGTTCTTCATTAATGCAGTTTTATTCTTTTAGGTTAATTTCAAAATACAATTAGTTTTC
AGCTTTCTTATGTTAAATATAGAATACTCTAGTAACGGTTCACTATGGATTAGGAGGTTGGCTT
ACCCTTTGTCTACTAGGATATCATTTTCTAGCTACCAGTTTTATATATATATTTGACAAAAGTT
AAAGTAGATTGGATTCATAAAAATTTACAAAAGGTGAACAAATTATCCACTAGCCCCAAAAACA
GCCTAAGAATTTACAAATAAGAGTATCTCCAAAAAGTTAAGTAGTTTTATGTTCAATTACATCA
AGAAAATTGCCATTACCTTCACCTTCCTGCTTGATGTAGAAAACTTTGGTTATAACAGATACTC
TGGAAGTAATTGCCTTGATATATTGTTGATTCGTTCTGTTTACTTTATTAATCAGATTCATCAT
CTCCAAAGCGACAAATATCAGAAAATAATGGTGATTTCATAACATCCAAGATGACAAGGTGTTG
TGGATTCTATAACTTCGAGTGTGCCTAGGTACGGGCAACTTTAGTGTGTAATTAGGGAATATGT
CTTAATATGATGGCAGGTATCCTTCAGCTGGAAGGAACTCTGATTTTAAAGAGCCAATAAGTCA
ATTAGATTGGTCTTATCATGAGGATGCTAGGGATGATTTGAGTTTGCTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 14686948-14685208(+)
Potential amino acid sequence MFQYVCSSPQKAARRHNLLKNFDYVWDDLELEVDVMMQDTNKPMSGGYLEFSSGTINSRSHRKL
KYSTVQDCEPFDGCGSKLQNSFGDSEFFHGVGNNSEDLWDVPARSSFVDDNLHIENRLNASGRN
WQSQSYGNELSDSAFEFPHLHKNRVLVKAADRYNILDSSSPKRQISENNGDFITSKMTRYPSAG
RNSDFKEPISQLDWSYHEDARDDLSLLSNFIRLPSRDHIPKEF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing an important role in the early flowering process
Other Information
References Zeng et al., 2018