Detail information of Os10g0564900_circ_g.1


General Information
CircRNA Name Os10g0564900_circ_g.1
ID in PlantcircBase osa_circ_008037
Alias Os_ciR6903
Organism Oryza sativa
Position chr10: 22312087-22313605  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os10g0564900
Parent gene annotation Similar to Protein kinase CK2 regulatory subunit CK2B2. (Os10t05
64900-01)
Parent gene strand +
Alternative splicing Os10g0564900_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os10t0564900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGACATATCCACACTTGAAGCCACAAAAGCCATCTCAGCAGTATGTTCCAAAAGTTTTTGGC
TTCAAACTTCACAAGCAGTCATGACAAACTTGTACGcagaagaatttgaaactgacagtgaaga
ttcagatgtcagtggttctgagggagaggacacatcttggatttcatggttctgcagtttgcgc
ggcaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAAGAATTTGAAACTGACAGTGAAGATTCAGATGTCAGTGGTTCTGAGGGAGAGGACACATC
TTGGATTTCATGGTTCTGCAGTTTGCGCGGCAATGAGTTCTTCTGTGAGATCGATGATGATTAT
ATACAGGATGATTTCAACCTTTGTGGTCTGAGCAATCAGGTGCCATATTATGACTATGCACTTG
ATCTTATCTTAGACATCGAGTCTTCTAATGGTGAGATTATTTTTCTCTTAAGAAAGCTACTAAT
TCATTATTTGCAGTAAAATACACTGTTCATATACCATTTATGAATGTCACTAGCTGCAACCTAT
ATTTTTCATACCACTTTGTATCCTAACATACTTTTTTATGTTCATCAATCTCATTTTCTAAAGG
AGCCATTTCCAATAACCTATTTATAAACATTCCACAGTTCAAAGTCTGAAACATGTATTGTATA
CACATACACCCTTCTAAGTCAGACCATTTGTATACAGGTGATGTGTTCACTGAGGAGCAAAATG
AATTAATTGAGTCATCTGCAGAGATGCTGTATGGATTAATTCATGCAAGATATATCTTAACCAG
CAAGGGTCTGGCTGCAATGGTAATCTGCTAGCAGTTTGACCATATTTGATAGGCTATGCTTGCT
TCCTTGACTACTTGAATACTAAATTATTCTGCTTTTGCCTTCTGCAGTTGGAGAAGTTCAAGAA
CTATGACTTTGGAAGATGCCCCCGGGTATACTGTTGTGGCCAACCCTGTCTTCCTGCAGGGCAA
TCAGATATTCCTAGGTCTAGCACAGTGAAGATATACTGTCCAAAATGTGAAGATTTACATTATC
CAAGATCCAAGTACCAAGGCAGTATCCTTTTGATTGTTTGTCTTAGATGTGTTTTATATGAACT
GCTTTTTTTCTTAATAAATTGTACTCATATATGGAGTTAAAAACGAGGTGATATCTGATAGGGC
ATAAATTAGAAATTGTGATTTCCTAAGCAGAATCAGACTTATTATTCGCAACAGCTAAAGCAAA
GCACAACACGAACATAGGCAGAATTATGAATACATGACCCATTTGTGCTGCTCTCTAAAACACA
TCCTTTAAAAAATCAAACTACTGAGTTTTTATGCCACCTGTAATGGATTTCACCACTCTCAGTT
TCTCCAAGTTATAGGTTGGTTTTTAGGCAGCACTTGAAAAGGGGCTCTGTGTAGAGGATTCTCA
TTCAAACATGGTTTTCCTTTATTTTTTTTATGCGACTCATACAATTTGATTAGATTTGTTTGGA
ACATAACCATGGGTAAACAAACATTGATTTTGTGCTATCATGAATATTGTGTTACTATTTTTCT
TGCACTTGTATCTCCTTTACTTTGCTAAGACATTGACGGAGCGTACTTTGGGACAACATTCCCA
CATCTCTTCCTGATGACATATCCACACTTGAAGCCACAAAAGCCATCTCAGCAGTATGTTCCAA
AAGTTTTTGGCTTCAAACTTCACAAGCAGTCATGACAAACTTGTACG
Conservation Information
Conserved circRNAs osi_circ_008713
PMCS 0.310281463
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015