Detail information of BGIOSGA031245_circ_g.5


General Information
CircRNA Name BGIOSGA031245_circ_g.5
ID in PlantcircBase osi_circ_018764
Alias Chr09:23650314_23650837(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 20945760-20946284  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA031245
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA031245_circ_g.3 BGIOSGA031245_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA031245-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTTTTTCTGTAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGG
TTCTGTAAGCCCTGCAAGATCAATACCCAGGACACAggaattaagaatcaaagagcatgcatat
ctcttaataggatggagaggtgtgaagaatttacaaatgaatcagcatgcagtccttgcggcga
taaacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATTAAGAATCAAAGAGCATGCATATCTCTTAATAGGATGGAGAGGTGTGAAGAATTTACAA
ATGAATCAGCATGCAGTCCTTGCGGCGATAAACATGCTGCGGTTCAAGCCTGTGAAGCAAAATT
TGAAAGGTTGTAACTCCAGGTGCATTCTACAGATTTCCTTTGAAGGATATGTTCCATAGAAAAT
ATTTCGTTTTTATTAATTTATCTTGCTTTTACAGACTGATCTGACAAAGTTCTGCATAATACCT
TATGCAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTGTTTGTGGTATCTCAAACCT
GGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTATCAAGGTTTGTCATATTCCCTTA
CCAGAACCTAGTACTGGAGTCTATTCACATAGAGCCTTGCATTTTTTTTTTCTGTAGGTGCACC
AAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTAAGCCCTGCAAGATCAA
TACCCAGGACACA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021