Plant Circular RNA Database

Detail information of Zm00001d006323_circ_g.2

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d006323_circ_g.2
					

						ID in PlantcircBase
						zma_circ_007344
					

						Alias
						zma_circ_0000894
					

						Organism
						
							Zea mays						
					

						Position
						
							chr2: 204603409-204603656  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						find_circ
					

						Parent gene
						
							Zm00001d006323						
					

						Parent gene annotation
						
							Histone-lysine N-methyltransferase ATX4
							
					

						Parent gene strand
						+
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d006323_T101:1
Zm00001d006323_T103:1
Zm00001d006323_T138:1
Zm00001d006323_T137:2
Zm00001d006323_T005:1
Zm00001d006323_T022:2
Zm00001d006323_T030:1
Zm00001d006323_T039:1
Zm00001d006323_T037:1
Zm00001d006323_T086:1
Zm00001d006323_T133:1
Zm00001d006323_T047:1
Zm00001d006323_T173:1
Zm00001d006323_T146:1
Zm00001d006323_T053:1
Zm00001d006323_T018:1
Zm00001d006323_T080:1
Zm00001d006323_T119:2
Zm00001d006323_T123:1
Zm00001d006323_T010:1
Zm00001d006323_T155:1
Zm00001d006323_T015:1
Zm00001d006323_T020:1
Zm00001d006323_T004:1
Zm00001d006323_T114:1
Zm00001d006323_T094:1
Zm00001d006323_T168:3
Zm00001d006323_T028:1
Zm00001d006323_T169:1
Zm00001d006323_T112:1
Zm00001d006323_T110:1
Zm00001d006323_T148:1
Zm00001d006323_T129:1
Zm00001d006323_T131:1
Zm00001d006323_T127:1
Zm00001d006323_T034:1
Zm00001d006323_T091:2
Zm00001d006323_T141:1
Zm00001d006323_T065:1
Zm00001d006323_T135:1
Zm00001d006323_T172:1
Zm00001d006323_T059:1
Zm00001d006323_T096:1
Zm00001d006323_T002:2
Zm00001d006323_T051:1
Zm00001d006323_T100:1
Zm00001d006323_T152:1
Zm00001d006323_T064:1
Zm00001d006323_T081:1
Zm00001d006323_T055:1
Zm00001d006323_T164:1
Zm00001d006323_T161:1
Zm00001d006323_T097:1
Zm00001d006323_T070:2
Zm00001d006323_T003:2
Zm00001d006323_T134:1
Zm00001d006323_T063:1
Zm00001d006323_T025:1
Zm00001d006323_T060:1
Zm00001d006323_T062:1
Zm00001d006323_T163:1
Zm00001d006323_T108:1
Zm00001d006323_T077:1
Zm00001d006323_T067:1
Zm00001d006323_T069:2
Zm00001d006323_T139:1
Zm00001d006323_T026:1
Zm00001d006323_T008:2
Zm00001d006323_T088:1
Zm00001d006323_T098:1
Zm00001d006323_T171:1
Zm00001d006323_T016:1
Zm00001d006323_T084:1
Zm00001d006323_T149:1
Zm00001d006323_T044:1
Zm00001d006323_T042:1
Zm00001d006323_T158:1
Zm00001d006323_T074:1
Zm00001d006323_T157:1
Zm00001d006323_T049:1
Zm00001d006323_T057:1
Zm00001d006323_T140:1
Zm00001d006323_T075:1
Zm00001d006323_T102:1
Zm00001d006323_T122:1
Zm00001d006323_T058:1
Zm00001d006323_T136:1
Zm00001d006323_T001:1
Zm00001d006323_T166:1
Zm00001d006323_T013:1
Zm00001d006323_T118:1
Zm00001d006323_T031:1
Zm00001d006323_T105:1
Zm00001d006323_T038:1
Zm00001d006323_T072:1

					

			
		

General Information
CircRNA Name	Zm00001d006323_circ_g.2
ID in PlantcircBase	zma_circ_007344
Alias	zma_circ_0000894
Organism	Zea mays
Position	chr2: 204603409-204603656 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d006323
Parent gene annotation	Histone-lysine N-methyltransferase ATX4
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d006323_T101:1 Zm00001d006323_T103:1 Zm00001d006323_T138:1 Zm00001d006323_T137:2 Zm00001d006323_T005:1 Zm00001d006323_T022:2 Zm00001d006323_T030:1 Zm00001d006323_T039:1 Zm00001d006323_T037:1 Zm00001d006323_T086:1 Zm00001d006323_T133:1 Zm00001d006323_T047:1 Zm00001d006323_T173:1 Zm00001d006323_T146:1 Zm00001d006323_T053:1 Zm00001d006323_T018:1 Zm00001d006323_T080:1 Zm00001d006323_T119:2 Zm00001d006323_T123:1 Zm00001d006323_T010:1 Zm00001d006323_T155:1 Zm00001d006323_T015:1 Zm00001d006323_T020:1 Zm00001d006323_T004:1 Zm00001d006323_T114:1 Zm00001d006323_T094:1 Zm00001d006323_T168:3 Zm00001d006323_T028:1 Zm00001d006323_T169:1 Zm00001d006323_T112:1 Zm00001d006323_T110:1 Zm00001d006323_T148:1 Zm00001d006323_T129:1 Zm00001d006323_T131:1 Zm00001d006323_T127:1 Zm00001d006323_T034:1 Zm00001d006323_T091:2 Zm00001d006323_T141:1 Zm00001d006323_T065:1 Zm00001d006323_T135:1 Zm00001d006323_T172:1 Zm00001d006323_T059:1 Zm00001d006323_T096:1 Zm00001d006323_T002:2 Zm00001d006323_T051:1 Zm00001d006323_T100:1 Zm00001d006323_T152:1 Zm00001d006323_T064:1 Zm00001d006323_T081:1 Zm00001d006323_T055:1 Zm00001d006323_T164:1 Zm00001d006323_T161:1 Zm00001d006323_T097:1 Zm00001d006323_T070:2 Zm00001d006323_T003:2 Zm00001d006323_T134:1 Zm00001d006323_T063:1 Zm00001d006323_T025:1 Zm00001d006323_T060:1 Zm00001d006323_T062:1 Zm00001d006323_T163:1 Zm00001d006323_T108:1 Zm00001d006323_T077:1 Zm00001d006323_T067:1 Zm00001d006323_T069:2 Zm00001d006323_T139:1 Zm00001d006323_T026:1 Zm00001d006323_T008:2 Zm00001d006323_T088:1 Zm00001d006323_T098:1 Zm00001d006323_T171:1 Zm00001d006323_T016:1 Zm00001d006323_T084:1 Zm00001d006323_T149:1 Zm00001d006323_T044:1 Zm00001d006323_T042:1 Zm00001d006323_T158:1 Zm00001d006323_T074:1 Zm00001d006323_T157:1 Zm00001d006323_T049:1 Zm00001d006323_T057:1 Zm00001d006323_T140:1 Zm00001d006323_T075:1 Zm00001d006323_T102:1 Zm00001d006323_T122:1 Zm00001d006323_T058:1 Zm00001d006323_T136:1 Zm00001d006323_T001:1 Zm00001d006323_T166:1 Zm00001d006323_T013:1 Zm00001d006323_T118:1 Zm00001d006323_T031:1 Zm00001d006323_T105:1 Zm00001d006323_T038:1 Zm00001d006323_T072:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGATTTTCTCTTAGAATACTAGGAATATGAAATGCCATCTCATTTCAGTCATTGGAGAAGATGA
CTCTCTTGGTCTAACAGATGTGGAAATAAATTGCCTcccacaagctgaatatgaactgcaggat
tccaaaaggagtaggtattcatctaatgatctgaggtcacatgtggctctccacaaaagaacat
ctggtggt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CCCACAAGCTGAATATGAACTGCAGGATTCCAAAAGGAGTAGGTATTCATCTAATGATCTGAGG
TCACATGTGGCTCTCCACAAAAGAACATCTGGTGGTATGGTTCTAGAACATTCTTTTCAACTAG
TTTGAGCATATATCTTCCTTTGATTTTCTCTTAGAATACTAGGAATATGAAATGCCATCTCATT
TCAGTCATTGGAGAAGATGACTCTCTTGGTCTAACAGATGTGGAAATAAATTGCCT

Sequences
Splice junction sequence	TGATTTTCTCTTAGAATACTAGGAATATGAAATGCCATCTCATTTCAGTCATTGGAGAAGATGA CTCTCTTGGTCTAACAGATGTGGAAATAAATTGCCTcccacaagctgaatatgaactgcaggat tccaaaaggagtaggtattcatctaatgatctgaggtcacatgtggctctccacaaaagaacat ctggtggt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCCACAAGCTGAATATGAACTGCAGGATTCCAAAAGGAGTAGGTATTCATCTAATGATCTGAGG TCACATGTGGCTCTCCACAAAAGAACATCTGGTGGTATGGTTCTAGAACATTCTTTTCAACTAG TTTGAGCATATATCTTCCTTTGATTTTCTCTTAGAATACTAGGAATATGAAATGCCATCTCATT TCAGTCATTGGAGAAGATGACTCTCTTGGTCTAACAGATGTGGAAATAAATTGCCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.119287366

Conservation Information
Conserved circRNAs	NA
PMCS	0.119287366

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d006323_circ_g.2

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