Detail information of AT2G02910_circ_g.1


General Information
CircRNA Name AT2G02910_circ_g.1
ID in PlantcircBase ath_circ_012620
Alias Ath_circ_FC5254
Organism Arabidpsis thaliana
Position chr2: 848441-848761  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G02910
Parent gene annotation At2g02910
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered AT2G02910.1:1
AT2G02910.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTCTACAAAGCCTAACGAAAACCGAGTGAAATTCAAATAATCCTGAGGCTCAAGTATGCGAT
CAGCAGATTCAGCAAGTGGAACTTCACAAGGTAAATcctttttggttgcaggtctccttagaaa
atcagagcttccaaaaatgcaagaagacacagagactacacagttcttcatataggccctatcc
ttttcgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTTGGTTGCAGGTCTCCTTAGAAAATCAGAGCTTCCAAAAATGCAAGAAGACACAGAGAC
TACACAGTTCTTCATATAGGCCCTATCCTTTTCGCTCAAATCAAATCCAGTTCCTTTGACAAAA
CCACAGTGAATTGTCTGATTTACTGCAGAGTAAGATCTCTCTCTTTCACTGAGTGTTTGATGCC
CTCCAAACCTAGGGTTATCATATGTCTCAGTCTCTACAAAGCCTAACGAAAACCGAGTGAAATT
CAAATAATCCTGAGGCTCAAGTATGCGATCAGCAGATTCAGCAAGTGGAACTTCACAAGGTAAA
T
Conservation Information
Conserved circRNAs NA
PMCS 0.235202934
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a