Detail information of AT1G06870_circ_g.1


General Information
CircRNA Name AT1G06870_circ_g.1
ID in PlantcircBase ath_circ_001066
Alias NA
Organism Arabidpsis thaliana
Position chr1: 2109519-2109581  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT1G06870
Parent gene annotation Probable thylakoidal processing peptidase 2, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACCGTAGAATGATGTTTGATCTTGAGAGGgtgagattactggtttgttctgttcttaattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGATTACTGGTTTGTTCTGTTCTTAATTGTGACCGTAGAATGATGTTTGATCTTGAGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.137566138
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017