Detail information of Os06g0488600_circ_ig.3


General Information
CircRNA Name Os06g0488600_circ_ig.3
ID in PlantcircBase osa_circ_030919
Alias Os06circ10271
Organism Oryza sativa
Position chr6: 16797305-16797632  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0488600_circ_ig.4 EPlOSAG00000018220_circ_ig.1
Support reads 11
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATGAATCCAGTTTCCATCCATGATACGTGGATCCTTGAAATTAAATCCTTTAATGTGAGGGC
TTCCATCATTTTTTTGGTCTGTGTGCTCTATATTTTctatcttttacaatattcgtgatcggat
cccgttcatgaacaactatacttgactgtgccctatgataaaactcaaaccccaactctcttgc
cgcaataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATCTTTTACAATATTCGTGATCGGATCCCGTTCATGAACAACTATACTTGACTGTGCCCTAT
GATAAAACTCAAACCCCAACTCTCTTGCCGCAATAACAAATGCAGCTTCATCAGGGGACTCAGC
TTCATATGAAACCTTATGGGTTTCTTCATCCTCTTCAGGTATACATGTGTGACAGATGGCAAGC
AGACGGAAAAAATCTCTTATCATATCACTGTTAGGCTCATGAATCCAGTTTCCATCCATGATAC
GTGGATCCTTGAAATTAAATCCTTTAATGTGAGGGCTTCCATCATTTTTTTGGTCTGTGTGCTC
TATATTTT
Conservation Information
Conserved circRNAs osi_circ_006760*
PMCS 0.337388516
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015