Plant Circular RNA Database

Detail information of Os02g0557200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0557200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_015033
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 21099316-21101687  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0557200						
					
						Parent gene annotation
						
							Similar to Auxin response factor 1. (Os02t0557200-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0557200_circ_g.2 Os02g0557200_circ_g.3 Os02g0557200_circ_g.4 Os02g0557200_circ_g.5 Os02g0557200_circ_g.6 Os02g0557200_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0557200-01:9

General Information
CircRNA Name	Os02g0557200_circ_g.1
ID in PlantcircBase	osa_circ_015033
Alias	NA
Organism	Oryza sativa
Position	chr2: 21099316-21101687 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0557200
Parent gene annotation	Similar to Auxin response factor 1. (Os02t0557200-01)
Parent gene strand	+
Alternative splicing	Os02g0557200_circ_g.2 Os02g0557200_circ_g.3 Os02g0557200_circ_g.4 Os02g0557200_circ_g.5 Os02g0557200_circ_g.6 Os02g0557200_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0557200-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAAATATTTCTTCATGGTTTATAGGTTTAGTGGAACAATTATTGGTGTTGGGAGCATGTCAACG
TCTCCATGGGCAAATTCTGACTGGAGATCTTTGAAGggagctcttgcgatgcgttgtacaggga
gctatggcatgcttgcgctgggccgttggtcacagtgcctcgccaaggcgaattggtttactac
ttccccca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 959
Transcript exons: 21099316-21099431,21099655-21099750,21099882-21099938,21
100153-21100305,21100407-21100491,21100655-21100745,2110
0884-21101048,21101401-21101520,21101612-21101687
GGAGCTCTTGCGATGCGTTGTACAGGGAGCTATGGCATGCTTGCGCTGGGCCGTTGGTCACAGT
GCCTCGCCAAGGCGAATTGGTTTACTACTTCCCCCAGGGCCATATGGAACAGCTTGAGGCATCT
ACAGACCAACAGCTTGACCAGCATCTGCCTTTGTTTAACCTGCCATCTAAGATCCTCTGCAAAG
TGGTCAATGTAGAACTTAGGGCTGAAACCGATTCAGATGAGGTTTATGCTCAAATTATGCTGCA
ACCAGAAGCAGATCAAAATGAACTCACCAGCCCAAAACCTGAGCCACATGAACCTGAAAAATGC
AATGTCCATTCCTTCTGCAAGACTTTGACTGCTTCAGATACAAGCACCCATGGTGGATTTTCAG
TTCTTAGGAGGCATGCAGAAGAATGTCTTCCTCCCCTGGACATGACTCAGAATCCACCATGGCA
AGAGCTTGTGGCTAGAGATCTCCATGGAAACGAGTGGCATTTCCGTCACATCTTTCGAGGACAA
CCTAGGAGGCATCTGCTTACAACTGGCTGGAGTGTTTTTGTTAGCTCAAAAAGATTAGTTGCCG
GTGACGCATTCATCTTTCTGAGAGGTGAGAATGGAGAGCTACGAGTTGGTGTCAGGAGGCTCAT
GAGGCAACTAAATAACATGCCATCATCAGTAATATCAAGTCATAGTATGCATCTTGGAGTCCTA
GCAACTGCATCACATGCTATATCCACCGGAACTCTCTTTTCTGTTTTCTACAAACCAAGAACAA
GTCAGTCTGAGTTTGTTGTGAGTGCTAACAAGTACCTTGAAGCTAAAAACAGCAAGATATCTGT
TGGAATGAGGTTTAAGATGAGATTCGAGGGCGATGAAGCTCCTGAAAGAAGGTTTAGTGGAACA
ATTATTGGTGTTGGGAGCATGTCAACGTCTCCATGGGCAAATTCTGACTGGAGATCTTTGAAG
						
					

						Genomic sequence
						
							GGAGCTCTTGCGATGCGTTGTACAGGGAGCTATGGCATGCTTGCGCTGGGCCGTTGGTCACAGT
GCCTCGCCAAGGCGAATTGGTTTACTACTTCCCCCAGGGCCATATGGAACAGGTAAATCTCACT
ATAATATATCAATGCTTGCTTGCTCTCTATCATGTCCTAAAATTAAGGAGTTTGCTACTAATTT
GTGCCATAAGAATGTCACTTGTTCCTTGTGTTGACACACAGCAGTATGGTTTTGTTTCTTCGGC
AATGTAGTTATTTTAGTACGTCTTTCCTTTGAACTAATCTTATGTCTTTCCTTTGAACTGATCT
TTTCATGCTTTTTCTATAGCTTGAGGCATCTACAGACCAACAGCTTGACCAGCATCTGCCTTTG
TTTAACCTGCCATCTAAGATCCTCTGCAAAGTGGTCAATGTAGAACTTAGGGTAAGCATTTTCC
TTTTCTGGTCTGCAGTAGTTTCACGCTATATGAAAGTTCCTCTGGATTTTCTAGCAAGAGTATT
ACTTGTGTACCTTTCATCCTGTAGTTTACTCACCTTTTTTCCTCTGGTATGCAGGCTGAAACCG
ATTCAGATGAGGTTTATGCTCAAATTATGCTGCAACCAGAAGCAGATGTGAGTATGCTTTTCTT
ATATATTTTTCTTCTAAATAATAGTTGTCCTTTTCAGCTCATTTGAGCTTTTTATCAAGCTGTA
ATGTAGTGATCTTGCTCATGTCATAGTCCTTTCTTTCTTCTGATCGTCTTCTCTCATATTCTCA
CATAAATTCTATTGCCTTGGAATTTTATATGGGTATGTACTTATTCATTTTCCTTTATTCTGTT
GTTAGCAAAATGAACTCACCAGCCCAAAACCTGAGCCACATGAACCTGAAAAATGCAATGTCCA
TTCCTTCTGCAAGACTTTGACTGCTTCAGATACAAGCACCCATGGTGGATTTTCAGTTCTTAGG
AGGCATGCAGAAGAATGTCTTCCTCCCCTGGTTAGGACCAAAAATATTTTTAACTCCCTTCATA
TGCGGATAATCACATTGGATATTTGCTATCTGTAACATCTTCTGTATGTGGTATGGTTTATCTT
TAGGACATGACTCAGAATCCACCATGGCAAGAGCTTGTGGCTAGAGATCTCCATGGAAACGAGT
GGCATTTCCGTCACATCTTTCGAGGTAAGTTATAGGAAGAACATAGTAATAGTGAATGTAGTTC
CTTCTGAGCTTCCATAATGAAAGGGCTTCCCCAAAAGAAATTGGTGGCATATTAGTAATGCTTT
CCATGGTGATTTTGTTACTATGTCTCACAAAGGGTCCCCCCACCACTCCCTTATTTTAGGACAA
CCTAGGAGGCATCTGCTTACAACTGGCTGGAGTGTTTTTGTTAGCTCAAAAAGATTAGTTGCCG
GTGACGCATTCATCTTTCTGAGGTATGCAGGGGAACATTTGGAAGGCTTGAAGCCATTTAACAC
ATTTTGCTTATTTGCGTTTGTTTCCTGGGTCTGCGGAGTTCAGGATGAATATTCTATATCACTA
TTGCTGTTGTAAATACGGTGTTCATATAACAGAGGTGAGAATGGAGAGCTACGAGTTGGTGTCA
GGAGGCTCATGAGGCAACTAAATAACATGCCATCATCAGTAATATCAAGTCATAGTATGCATCT
TGGAGTCCTAGCAACTGCATCACATGCTATATCCACCGGAACTCTCTTTTCTGTTTTCTACAAA
CCAAGGTTTGATTCTTCTAATCTTATCATTGTACCTAAGTTCTTCACCAATGCTTTATGTACCT
CTAGCATTTTCTTATGTACAGATGCAATGTACTTCGTAATAAAATATGCATGATGTTATCTGAT
ATCCTGAGATGATTCCCTGGATGCCCATTTAAATTTTCACTTATGATATTGCTCTGTTGAGTGC
TTATAGAATTATATGTAACTTTTCCTCACAGAATTACATTCCATTTTAGGAATATATTTTTGTG
TGAGTTTGTTTGATAGGTCTTATTTATTTTCTTGTGCTAAACATATGTTGTACCATTACATTCT
AATAAGTCAGTGTTTGTTCATCTAATTTGGGTTTCAGAACAAGTCAGTCTGAGTTTGTTGTGAG
TGCTAACAAGTACCTTGAAGCTAAAAACAGCAAGATATCTGTTGGAATGAGGTTTAAGATGAGA
TTCGAGGGCGATGAAGCTCCTGAAAGAAGGTAATTTAACGTCTATTTTCCATCCACTGGTTTTT
CATTGGTTCAAAAATTGTGTGGGCACATCTCATAAATATTTCTTCATGGTTTATAGGTTTAGTG
GAACAATTATTGGTGTTGGGAGCATGTCAACGTCTCCATGGGCAAATTCTGACTGGAGATCTTT
GAAG
						
					

			
		

Sequences
Splice junction sequence	TAAATATTTCTTCATGGTTTATAGGTTTAGTGGAACAATTATTGGTGTTGGGAGCATGTCAACG TCTCCATGGGCAAATTCTGACTGGAGATCTTTGAAGggagctcttgcgatgcgttgtacaggga gctatggcatgcttgcgctgggccgttggtcacagtgcctcgccaaggcgaattggtttactac ttccccca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 959 Transcript exons: 21099316-21099431,21099655-21099750,21099882-21099938,21 100153-21100305,21100407-21100491,21100655-21100745,2110 0884-21101048,21101401-21101520,21101612-21101687 GGAGCTCTTGCGATGCGTTGTACAGGGAGCTATGGCATGCTTGCGCTGGGCCGTTGGTCACAGT GCCTCGCCAAGGCGAATTGGTTTACTACTTCCCCCAGGGCCATATGGAACAGCTTGAGGCATCT ACAGACCAACAGCTTGACCAGCATCTGCCTTTGTTTAACCTGCCATCTAAGATCCTCTGCAAAG TGGTCAATGTAGAACTTAGGGCTGAAACCGATTCAGATGAGGTTTATGCTCAAATTATGCTGCA ACCAGAAGCAGATCAAAATGAACTCACCAGCCCAAAACCTGAGCCACATGAACCTGAAAAATGC AATGTCCATTCCTTCTGCAAGACTTTGACTGCTTCAGATACAAGCACCCATGGTGGATTTTCAG TTCTTAGGAGGCATGCAGAAGAATGTCTTCCTCCCCTGGACATGACTCAGAATCCACCATGGCA AGAGCTTGTGGCTAGAGATCTCCATGGAAACGAGTGGCATTTCCGTCACATCTTTCGAGGACAA CCTAGGAGGCATCTGCTTACAACTGGCTGGAGTGTTTTTGTTAGCTCAAAAAGATTAGTTGCCG GTGACGCATTCATCTTTCTGAGAGGTGAGAATGGAGAGCTACGAGTTGGTGTCAGGAGGCTCAT GAGGCAACTAAATAACATGCCATCATCAGTAATATCAAGTCATAGTATGCATCTTGGAGTCCTA GCAACTGCATCACATGCTATATCCACCGGAACTCTCTTTTCTGTTTTCTACAAACCAAGAACAA GTCAGTCTGAGTTTGTTGTGAGTGCTAACAAGTACCTTGAAGCTAAAAACAGCAAGATATCTGT TGGAATGAGGTTTAAGATGAGATTCGAGGGCGATGAAGCTCCTGAAAGAAGGTTTAGTGGAACA ATTATTGGTGTTGGGAGCATGTCAACGTCTCCATGGGCAAATTCTGACTGGAGATCTTTGAAG
Genomic sequence	GGAGCTCTTGCGATGCGTTGTACAGGGAGCTATGGCATGCTTGCGCTGGGCCGTTGGTCACAGT GCCTCGCCAAGGCGAATTGGTTTACTACTTCCCCCAGGGCCATATGGAACAGGTAAATCTCACT ATAATATATCAATGCTTGCTTGCTCTCTATCATGTCCTAAAATTAAGGAGTTTGCTACTAATTT GTGCCATAAGAATGTCACTTGTTCCTTGTGTTGACACACAGCAGTATGGTTTTGTTTCTTCGGC AATGTAGTTATTTTAGTACGTCTTTCCTTTGAACTAATCTTATGTCTTTCCTTTGAACTGATCT TTTCATGCTTTTTCTATAGCTTGAGGCATCTACAGACCAACAGCTTGACCAGCATCTGCCTTTG TTTAACCTGCCATCTAAGATCCTCTGCAAAGTGGTCAATGTAGAACTTAGGGTAAGCATTTTCC TTTTCTGGTCTGCAGTAGTTTCACGCTATATGAAAGTTCCTCTGGATTTTCTAGCAAGAGTATT ACTTGTGTACCTTTCATCCTGTAGTTTACTCACCTTTTTTCCTCTGGTATGCAGGCTGAAACCG ATTCAGATGAGGTTTATGCTCAAATTATGCTGCAACCAGAAGCAGATGTGAGTATGCTTTTCTT ATATATTTTTCTTCTAAATAATAGTTGTCCTTTTCAGCTCATTTGAGCTTTTTATCAAGCTGTA ATGTAGTGATCTTGCTCATGTCATAGTCCTTTCTTTCTTCTGATCGTCTTCTCTCATATTCTCA CATAAATTCTATTGCCTTGGAATTTTATATGGGTATGTACTTATTCATTTTCCTTTATTCTGTT GTTAGCAAAATGAACTCACCAGCCCAAAACCTGAGCCACATGAACCTGAAAAATGCAATGTCCA TTCCTTCTGCAAGACTTTGACTGCTTCAGATACAAGCACCCATGGTGGATTTTCAGTTCTTAGG AGGCATGCAGAAGAATGTCTTCCTCCCCTGGTTAGGACCAAAAATATTTTTAACTCCCTTCATA TGCGGATAATCACATTGGATATTTGCTATCTGTAACATCTTCTGTATGTGGTATGGTTTATCTT TAGGACATGACTCAGAATCCACCATGGCAAGAGCTTGTGGCTAGAGATCTCCATGGAAACGAGT GGCATTTCCGTCACATCTTTCGAGGTAAGTTATAGGAAGAACATAGTAATAGTGAATGTAGTTC CTTCTGAGCTTCCATAATGAAAGGGCTTCCCCAAAAGAAATTGGTGGCATATTAGTAATGCTTT CCATGGTGATTTTGTTACTATGTCTCACAAAGGGTCCCCCCACCACTCCCTTATTTTAGGACAA CCTAGGAGGCATCTGCTTACAACTGGCTGGAGTGTTTTTGTTAGCTCAAAAAGATTAGTTGCCG GTGACGCATTCATCTTTCTGAGGTATGCAGGGGAACATTTGGAAGGCTTGAAGCCATTTAACAC ATTTTGCTTATTTGCGTTTGTTTCCTGGGTCTGCGGAGTTCAGGATGAATATTCTATATCACTA TTGCTGTTGTAAATACGGTGTTCATATAACAGAGGTGAGAATGGAGAGCTACGAGTTGGTGTCA GGAGGCTCATGAGGCAACTAAATAACATGCCATCATCAGTAATATCAAGTCATAGTATGCATCT TGGAGTCCTAGCAACTGCATCACATGCTATATCCACCGGAACTCTCTTTTCTGTTTTCTACAAA CCAAGGTTTGATTCTTCTAATCTTATCATTGTACCTAAGTTCTTCACCAATGCTTTATGTACCT CTAGCATTTTCTTATGTACAGATGCAATGTACTTCGTAATAAAATATGCATGATGTTATCTGAT ATCCTGAGATGATTCCCTGGATGCCCATTTAAATTTTCACTTATGATATTGCTCTGTTGAGTGC TTATAGAATTATATGTAACTTTTCCTCACAGAATTACATTCCATTTTAGGAATATATTTTTGTG TGAGTTTGTTTGATAGGTCTTATTTATTTTCTTGTGCTAAACATATGTTGTACCATTACATTCT AATAAGTCAGTGTTTGTTCATCTAATTTGGGTTTCAGAACAAGTCAGTCTGAGTTTGTTGTGAG TGCTAACAAGTACCTTGAAGCTAAAAACAGCAAGATATCTGTTGGAATGAGGTTTAAGATGAGA TTCGAGGGCGATGAAGCTCCTGAAAGAAGGTAATTTAACGTCTATTTTCCATCCACTGGTTTTT CATTGGTTCAAAAATTGTGTGGGCACATCTCATAAATATTTCTTCATGGTTTATAGGTTTAGTG GAACAATTATTGGTGTTGGGAGCATGTCAACGTCTCCATGGGCAAATTCTGACTGGAGATCTTT GAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.222009626

Conservation Information
Conserved circRNAs	NA
PMCS	0.222009626

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							21099424-21099739(+)
						
						Potential amino acid sequence
						
							MEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKPE
PHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHF
RHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSH
SMHLGVLATASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAP
ERRFSGTIIGVGSMSTSPWANSDWRSLKGALAMRCTGSYGMLALGRWSQCLAKANWFTTSPRAI
WNSLRHLQTNSLTSICLCLTCHLRSSAKWSM*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	21099424-21099739(+)
Potential amino acid sequence	MEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKPE PHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHF RHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSH SMHLGVLATASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAP ERRFSGTIIGVGSMSTSPWANSDWRSLKGALAMRCTGSYGMLALGRWSQCLAKANWFTTSPRAI WNSLRHLQTNSLTSICLCLTCHLRSSAKWSM*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0557200_circ_g.1

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